Analysis of interatomic Contacts of Structural Units in PDB entry:
3V47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V47 entry

There are 4 chains in PDB entry 3V47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 24PRO 464
B
 GLU 24PRO 464
C
 SER 64ALA 459
D
 GLN 62TYR 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3V47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
134 139Right-handed alpha
Helix 2
2
A
164 170Right-handed 310
Helix 3
3
A
191 195Right-handed 310
Helix 4
4
A
218 223Right-handed alpha
Helix 5
5
A
242 253Right-handed alpha
Helix 6
6
A
286 290Right-handed 310
Helix 7
7
A
356 361Right-handed 310
Helix 8
8
A
431 441Right-handed alpha
Helix 9
9
A
457 461Right-handed 310
Helix 10
10
B
134 139Right-handed alpha
Helix 11
11
B
164 170Right-handed 310
Helix 12
12
B
191 195Right-handed 310
Helix 13
13
B
218 223Right-handed alpha
Helix 14
14
B
242 253Right-handed alpha
Helix 15
15
B
286 290Right-handed 310
Helix 16
16
B
356 361Right-handed 310
Helix 17
17
B
431 441Right-handed alpha
Helix 18
18
B
457 461Right-handed 310
Helix 19
19
C
65 101Right-handed alpha
Helix 20
20
C
104 129Right-handed alpha
Helix 21
21
C
181 189Right-handed alpha
Helix 22
22
C
351 358Right-handed alpha
Helix 23
23
C
405 409Right-handed alpha
Helix 24
24
C
416 451Right-handed alpha
Helix 25
25
D
63 101Right-handed alpha
Helix 26
26
D
104 129Right-handed alpha
Helix 27
27
D
181 189Right-handed alpha
Helix 28
28
D
351 358Right-handed alpha
Helix 29
29
D
405 409Right-handed alpha
Helix 30
30
D
416 451Right-handed alpha
Helix 31
31
D
455 460Right-handed alpha
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There are 18 sheets in PDB entry 3V47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
31 33anti-parallel
Strand 3
A
51 53parallel
Strand 4
A
75 77parallel
Strand 5
A
100 102parallel
Strand 6
A
124 126parallel
Strand 7
A
150 152parallel
Strand 8
A
175 177parallel
Strand 9
A
198 203parallel
Strand 10
A
230 235parallel
Strand 11
A
258 262parallel
Strand 12
A
296 298parallel
Strand 13
A
320 322parallel
Strand 14
A
344 346parallel
Strand 15
A
368 370parallel
Strand 16
A
392 394parallel
Strand 17
A
416 418parallel
Strand 18
A
445 446parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
86 87parallel
Strand 3
A
110 111parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
330 331parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
378 379parallel
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There are 18 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
31 33anti-parallel
Strand 3
B
51 53parallel
Strand 4
B
75 77parallel
Strand 5
B
100 102parallel
Strand 6
B
124 126parallel
Strand 7
B
150 152parallel
Strand 8
B
175 177parallel
Strand 9
B
198 203parallel
Strand 10
B
230 235parallel
Strand 11
B
258 262parallel
Strand 12
B
296 298parallel
Strand 13
B
320 322parallel
Strand 14
B
344 346parallel
Strand 15
B
368 370parallel
Strand 16
B
392 394parallel
Strand 17
B
416 418parallel
Strand 18
B
445 446parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
86 87parallel
Strand 3
B
110 111parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
330 331parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 355first strand
Strand 2
B
378 379parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 131first strand
Strand 2
C
134 135anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
141 146first strand
Strand 2
C
154 159anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
390 394anti-parallel
Strand 3
C
400 404anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 216first strand
Strand 2
C
203 208anti-parallel
Strand 3
C
193 200anti-parallel
Strand 4
C
361 362anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 216first strand
Strand 2
C
203 208anti-parallel
Strand 3
C
193 200anti-parallel
Strand 4
C
365 368anti-parallel
Strand 5
C
373 376anti-parallel
Strand 6
C
383 384anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 234first strand
Strand 2
C
225 226anti-parallel
Strand 3
C
348 349anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 239first strand
Strand 2
C
345 346anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 146first strand
Strand 2
D
154 159anti-parallel
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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
178 179first strand
Strand 2
D
388 394anti-parallel
Strand 3
D
383 385anti-parallel
Strand 4
D
372 376anti-parallel
Strand 5
D
365 369anti-parallel
Strand 6
D
193 200anti-parallel
Strand 7
D
203 208anti-parallel
Strand 8
D
214 216anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
178 179first strand
Strand 2
D
388 394anti-parallel
Strand 3
D
400 404anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il