Analysis of interatomic Contacts of Structural Units in PDB entry:
3V4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V4C entry

There are 2 chains in PDB entry 3V4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 0PHE 503
B
 PHE 3ASP 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3V4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 57Right-handed alpha
Helix 2
2
A
60 78Right-handed alpha
Helix 3
3
A
78 91Right-handed alpha
Helix 4
4
A
93 118Right-handed alpha
Helix 5
5
A
119 122Right-handed 310
Helix 6
6
A
166 176Right-handed alpha
Helix 7
7
A
187 206Right-handed alpha
Helix 8
8
A
208 210Right-handed 310
Helix 9
9
A
219 229Right-handed alpha
Helix 10
10
A
240 254Right-handed alpha
Helix 11
11
A
273 294Right-handed alpha
Helix 12
12
A
295 298Right-handed 310
Helix 13
13
A
311 327Right-handed alpha
Helix 14
14
A
335 351Right-handed alpha
Helix 15
15
A
377 383Right-handed alpha
Helix 16
16
A
384 388Right-handed 310
Helix 17
17
A
402 413Right-handed alpha
Helix 18
18
A
424 426Right-handed 310
Helix 19
19
A
427 441Right-handed alpha
Helix 20
20
A
478 484Right-handed 310
Helix 21
21
A
495 499Right-handed 310
Helix 22
22
B
38 57Right-handed alpha
Helix 23
23
B
60 78Right-handed alpha
Helix 24
24
B
78 91Right-handed alpha
Helix 25
25
B
93 118Right-handed alpha
Helix 26
26
B
119 122Right-handed 310
Helix 27
27
B
166 176Right-handed alpha
Helix 28
28
B
187 206Right-handed alpha
Helix 29
29
B
208 210Right-handed 310
Helix 30
30
B
219 229Right-handed alpha
Helix 31
31
B
240 254Right-handed alpha
Helix 32
32
B
273 294Right-handed alpha
Helix 33
33
B
295 298Right-handed 310
Helix 34
34
B
311 326Right-handed alpha
Helix 35
35
B
335 351Right-handed alpha
Helix 36
36
B
377 383Right-handed alpha
Helix 37
37
B
384 388Right-handed 310
Helix 38
38
B
402 413Right-handed alpha
Helix 39
39
B
424 426Right-handed 310
Helix 40
40
B
427 441Right-handed alpha
Helix 41
41
B
478 484Right-handed 310
Helix 42
42
B
495 499Right-handed 310
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There are 10 sheets in PDB entry 3V4C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
33 35anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
140 146anti-parallel
Strand 3
A
486 492anti-parallel
Strand 4
B
442 447parallel
Strand 5
B
416 422parallel
Strand 6
B
270 272parallel
Strand 7
B
305 309parallel
Strand 8
B
394 400parallel
Strand 9
B
371 376parallel
Strand 10
B
356 359anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
179 182parallel
Strand 3
A
150 153parallel
Strand 4
A
234 238parallel
Strand 5
A
260 263parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
371 376anti-parallel
Strand 3
A
394 400parallel
Strand 4
A
305 309parallel
Strand 5
A
270 272parallel
Strand 6
A
416 422parallel
Strand 7
A
442 447parallel
Strand 8
B
486 492parallel
Strand 9
B
140 146anti-parallel
Strand 10
B
124 126anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
367 368anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
14 16anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
33 35anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 215first strand
Strand 2
B
179 182parallel
Strand 3
B
150 153parallel
Strand 4
B
234 238parallel
Strand 5
B
260 263parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 332first strand
Strand 2
B
367 368anti-parallel
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