Analysis of interatomic Contacts of Structural Units in PDB entry:
3V4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V4L entry

There are 2 chains in PDB entry 3V4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 344LEU 729
B
 VAL 2ARG 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3V4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
368 384Right-handed alpha
Helix 2
2
A
395 408Right-handed alpha
Helix 3
3
A
450 459Right-handed alpha
Helix 4
4
A
518 524Right-handed alpha
Helix 5
5
A
532 546Right-handed alpha
Helix 6
6
A
578 590Right-handed alpha
Helix 7
7
A
644 648Right-handed 310
Helix 8
8
A
650 654Right-handed 310
Helix 9
9
A
658 663Right-handed 310
Helix 10
10
A
682 686Right-handed 310
Helix 11
11
A
718 724Right-handed 310
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There are 5 sheets in PDB entry 3V4L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 392first strand
Strand 2
A
351 357parallel
Strand 3
A
415 421parallel
Strand 4
A
464 470parallel
Strand 5
A
494 498parallel
Strand 6
A
557 560anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 427first strand
Strand 2
A
430 434anti-parallel
Strand 3
A
448 449anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
507 509anti-parallel
Strand 3
B
3 4anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 601first strand
Strand 2
A
607 616anti-parallel
Strand 3
A
619 628anti-parallel
Strand 4
A
676 680anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 641first strand
Strand 2
A
690 700anti-parallel
Strand 3
A
707 716anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il