Analysis of interatomic Contacts of Structural Units in PDB entry:
3V4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V4Z entry

There are 2 chains in PDB entry 3V4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 2ASP 306
B
MET 1ASP 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3V4Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 34Right-handed alpha
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
70 80Right-handed alpha
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
96 107Right-handed alpha
Helix 6
6
A
119 123Right-handed alpha
Helix 7
7
A
126 135Right-handed alpha
Helix 8
8
A
136 138Right-handed 310
Helix 9
9
A
159 161Right-handed 310
Helix 10
10
A
162 172Right-handed alpha
Helix 11
11
A
230 247Right-handed alpha
Helix 12
12
A
281 291Right-handed alpha
Helix 13
13
A
293 304Right-handed alpha
Helix 14
14
B
15 33Right-handed alpha
Helix 15
15
B
46 50Right-handed 310
Helix 16
16
B
70 80Right-handed alpha
Helix 17
17
B
87 94Right-handed alpha
Helix 18
18
B
96 108Right-handed alpha
Helix 19
19
B
119 125Right-handed alpha
Helix 20
20
B
126 133Right-handed alpha
Helix 21
21
B
134 138Right-handed 310
Helix 22
22
B
162 171Right-handed alpha
Helix 23
23
B
230 248Right-handed alpha
Helix 24
24
B
281 291Right-handed alpha
Helix 25
25
B
293 304Right-handed alpha
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There are 7 sheets in PDB entry 3V4Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
37 41first strand
Strand 2
A
5 9parallel
Strand 3
A
57 60parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 118first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
155 157anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 197first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
201 204anti-parallel
Strand 4
A
222 224anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 197first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
253 260anti-parallel
Strand 4
A
266 272anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 41first strand
Strand 2
B
5 9parallel
Strand 3
B
57 60parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
114 118first strand
Strand 2
B
176 181anti-parallel
Strand 3
B
141 145anti-parallel
Strand 4
B
155 157anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
222 224first strand
Strand 2
B
196 204anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
253 260anti-parallel
Strand 5
B
266 272anti-parallel
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