Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V5C entry

There are 4 chains in PDB entry 3V5C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	HIS 387
B	LEU 3	GLY 386
C	LEU 3	HIS 387
D	LEU 3	GLY 386

There are 55 helices in PDB entry 3V5C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	65	71	Right-handed alpha
Helix 2	2	A	76	81	Right-handed 310
Helix 3	3	A	88	90	Right-handed 310
Helix 4	4	A	91	108	Right-handed alpha
Helix 5	5	A	110	116	Right-handed alpha
Helix 6	6	A	144	162	Right-handed alpha
Helix 7	7	A	179	199	Right-handed alpha
Helix 8	8	A	213	224	Right-handed alpha
Helix 9	9	A	239	254	Right-handed alpha
Helix 10	10	A	269	276	Right-handed alpha
Helix 11	11	A	290	304	Right-handed alpha
Helix 12	12	A	316	326	Right-handed alpha
Helix 13	13	A	327	329	Right-handed 310
Helix 14	14	A	370	381	Right-handed alpha
Helix 15	15	B	65	71	Right-handed alpha
Helix 16	16	B	76	81	Right-handed alpha
Helix 17	17	B	88	90	Right-handed 310
Helix 18	18	B	91	108	Right-handed alpha
Helix 19	19	B	110	116	Right-handed alpha
Helix 20	20	B	144	162	Right-handed alpha
Helix 21	21	B	172	177	Right-handed alpha
Helix 22	22	B	179	199	Right-handed alpha
Helix 23	23	B	213	224	Right-handed alpha
Helix 24	24	B	239	253	Right-handed alpha
Helix 25	25	B	269	276	Right-handed alpha
Helix 26	26	B	290	304	Right-handed alpha
Helix 27	27	B	316	326	Right-handed alpha
Helix 28	28	B	370	381	Right-handed alpha
Helix 29	29	C	65	71	Right-handed alpha
Helix 30	30	C	76	81	Right-handed 310
Helix 31	31	C	88	90	Right-handed 310
Helix 32	32	C	91	108	Right-handed alpha
Helix 33	33	C	110	116	Right-handed alpha
Helix 34	34	C	144	162	Right-handed alpha
Helix 35	35	C	179	199	Right-handed alpha
Helix 36	36	C	213	224	Right-handed alpha
Helix 37	37	C	239	254	Right-handed alpha
Helix 38	38	C	269	276	Right-handed alpha
Helix 39	39	C	290	304	Right-handed alpha
Helix 40	40	C	316	326	Right-handed alpha
Helix 41	41	C	327	329	Right-handed 310
Helix 42	42	C	370	382	Right-handed alpha
Helix 43	43	D	65	73	Right-handed alpha
Helix 44	44	D	76	81	Right-handed 310
Helix 45	45	D	88	90	Right-handed 310
Helix 46	46	D	91	108	Right-handed alpha
Helix 47	47	D	110	115	Right-handed alpha
Helix 48	48	D	144	161	Right-handed alpha
Helix 49	49	D	179	199	Right-handed alpha
Helix 50	50	D	213	224	Right-handed alpha
Helix 51	51	D	239	254	Right-handed alpha
Helix 52	52	D	269	276	Right-handed alpha
Helix 53	53	D	290	304	Right-handed alpha
Helix 54	54	D	315	326	Right-handed alpha
Helix 55	55	D	370	382	Right-handed alpha

There are 20 sheets in PDB entry 3V5C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	40	52	anti-parallel
Strand 3	A	14	30	anti-parallel
Strand 4	A	340	342	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	40	52	anti-parallel
Strand 3	A	14	30	anti-parallel
Strand 4	A	383	386	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	281	282	parallel
Strand 3	A	258	261	parallel
Strand 4	A	231	233	parallel
Strand 5	A	204	207	parallel
Strand 6	A	167	170	parallel
Strand 7	A	126	135	parallel
Strand 8	A	335	337	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	281	282	parallel
Strand 3	A	258	261	parallel
Strand 4	A	231	233	parallel
Strand 5	A	204	207	parallel
Strand 6	A	167	170	parallel
Strand 7	A	126	135	parallel
Strand 8	A	356	359	anti-parallel
Strand 9	A	351	353	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	368	369	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	40	52	anti-parallel
Strand 3	B	14	30	anti-parallel
Strand 4	B	340	342	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	40	52	anti-parallel
Strand 3	B	14	30	anti-parallel
Strand 4	B	383	385	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	281	282	parallel
Strand 3	B	258	261	parallel
Strand 4	B	229	233	parallel
Strand 5	B	204	207	parallel
Strand 6	B	167	170	parallel
Strand 7	B	126	135	parallel
Strand 8	B	335	337	parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	281	282	parallel
Strand 3	B	258	261	parallel
Strand 4	B	229	233	parallel
Strand 5	B	204	207	parallel
Strand 6	B	167	170	parallel
Strand 7	B	126	135	parallel
Strand 8	B	356	359	anti-parallel
Strand 9	B	351	353	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	368	369	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	40	52	anti-parallel
Strand 3	C	14	30	anti-parallel
Strand 4	C	340	342	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	40	52	anti-parallel
Strand 3	C	14	30	anti-parallel
Strand 4	C	383	386	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	281	282	parallel
Strand 3	C	258	261	parallel
Strand 4	C	229	233	parallel
Strand 5	C	204	207	parallel
Strand 6	C	167	170	parallel
Strand 7	C	126	135	parallel
Strand 8	C	335	337	parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	281	282	parallel
Strand 3	C	258	261	parallel
Strand 4	C	229	233	parallel
Strand 5	C	204	207	parallel
Strand 6	C	167	170	parallel
Strand 7	C	126	135	parallel
Strand 8	C	356	359	anti-parallel
Strand 9	C	351	353	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	368	369	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	40	52	anti-parallel
Strand 3	D	14	30	anti-parallel
Strand 4	D	340	342	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	40	52	anti-parallel
Strand 3	D	14	30	anti-parallel
Strand 4	D	383	385	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	281	282	parallel
Strand 3	D	258	261	parallel
Strand 4	D	229	233	parallel
Strand 5	D	204	207	parallel
Strand 6	D	167	170	parallel
Strand 7	D	126	135	parallel
Strand 8	D	335	337	parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	281	282	parallel
Strand 3	D	258	261	parallel
Strand 4	D	229	233	parallel
Strand 5	D	204	207	parallel
Strand 6	D	167	170	parallel
Strand 7	D	126	135	parallel
Strand 8	D	356	359	anti-parallel
Strand 9	D	351	353	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	346	first strand
Strand 2	D	368	369	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V5C

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5C