Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V5F entry

There is 1 chain in PDB entry 3V5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3V5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 73Right-handed alpha
Helix 2
2
A
76 79Right-handed 310
Helix 3
3
A
91 108Right-handed alpha
Helix 4
4
A
110 115Right-handed alpha
Helix 5
5
A
144 162Right-handed alpha
Helix 6
6
A
172 176Right-handed 310
Helix 7
7
A
179 199Right-handed alpha
Helix 8
8
A
213 224Right-handed alpha
Helix 9
9
A
239 254Right-handed alpha
Helix 10
10
A
269 276Right-handed alpha
Helix 11
11
A
290 304Right-handed alpha
Helix 12
12
A
315 326Right-handed alpha
Helix 13
13
A
370 381Right-handed alpha
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There are 6 sheets in PDB entry 3V5F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
40 52anti-parallel
Strand 3
A
14 30anti-parallel
Strand 4
A
340 342anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
40 52anti-parallel
Strand 3
A
14 30anti-parallel
Strand 4
A
383 386anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
86 87anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
281 282parallel
Strand 3
A
258 261parallel
Strand 4
A
229 233parallel
Strand 5
A
204 207parallel
Strand 6
A
167 170parallel
Strand 7
A
126 135parallel
Strand 8
A
335 337parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
281 282parallel
Strand 3
A
258 261parallel
Strand 4
A
229 233parallel
Strand 5
A
204 207parallel
Strand 6
A
167 170parallel
Strand 7
A
126 135parallel
Strand 8
A
356 359anti-parallel
Strand 9
A
351 353anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
368 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il