Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V5N entry

There are 4 chains in PDB entry 3V5N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LYS 393
B	GLN 12	LYS 393
C	GLN 12	LYS 393
D	GLN 12	LYS 393

There are 55 helices in PDB entry 3V5N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	39	Right-handed alpha
Helix 2	2	A	52	64	Right-handed alpha
Helix 3	3	A	66	70	Right-handed 310
Helix 4	4	A	73	84	Right-handed alpha
Helix 5	5	A	99	109	Right-handed alpha
Helix 6	6	A	123	137	Right-handed alpha
Helix 7	7	A	145	149	Right-handed 310
Helix 8	8	A	150	162	Right-handed alpha
Helix 9	9	A	205	210	Right-handed alpha
Helix 10	10	A	210	223	Right-handed alpha
Helix 11	11	A	318	323	Right-handed alpha
Helix 12	12	A	334	352	Right-handed alpha
Helix 13	13	A	367	387	Right-handed alpha
Helix 14	14	B	27	39	Right-handed alpha
Helix 15	15	B	52	63	Right-handed alpha
Helix 16	16	B	66	70	Right-handed 310
Helix 17	17	B	73	83	Right-handed alpha
Helix 18	18	B	96	98	Right-handed 310
Helix 19	19	B	99	110	Right-handed alpha
Helix 20	20	B	123	137	Right-handed alpha
Helix 21	21	B	145	149	Right-handed 310
Helix 22	22	B	150	163	Right-handed alpha
Helix 23	23	B	205	210	Right-handed alpha
Helix 24	24	B	210	223	Right-handed alpha
Helix 25	25	B	318	323	Right-handed alpha
Helix 26	26	B	334	352	Right-handed alpha
Helix 27	27	B	367	387	Right-handed alpha
Helix 28	28	C	27	38	Right-handed alpha
Helix 29	29	C	52	63	Right-handed alpha
Helix 30	30	C	66	70	Right-handed 310
Helix 31	31	C	73	84	Right-handed alpha
Helix 32	32	C	96	98	Right-handed 310
Helix 33	33	C	99	110	Right-handed alpha
Helix 34	34	C	123	137	Right-handed alpha
Helix 35	35	C	145	149	Right-handed 310
Helix 36	36	C	150	162	Right-handed alpha
Helix 37	37	C	178	182	Right-handed 310
Helix 38	38	C	205	210	Right-handed alpha
Helix 39	39	C	210	223	Right-handed alpha
Helix 40	40	C	318	323	Right-handed alpha
Helix 41	41	C	334	352	Right-handed alpha
Helix 42	42	C	367	387	Right-handed alpha
Helix 43	43	D	29	39	Right-handed alpha
Helix 44	44	D	52	64	Right-handed alpha
Helix 45	45	D	66	70	Right-handed 310
Helix 46	46	D	73	84	Right-handed alpha
Helix 47	47	D	96	98	Right-handed 310
Helix 48	48	D	99	110	Right-handed alpha
Helix 49	49	D	123	137	Right-handed alpha
Helix 50	50	D	145	149	Right-handed 310
Helix 51	51	D	150	162	Right-handed alpha
Helix 52	52	D	210	223	Right-handed alpha
Helix 53	53	D	318	323	Right-handed alpha
Helix 54	54	D	334	353	Right-handed alpha
Helix 55	55	D	367	387	Right-handed alpha

There are 6 sheets in PDB entry 3V5N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	48	first strand
Strand 2	A	15	20	parallel
Strand 3	A	90	93	parallel
Strand 4	A	113	117	parallel
Strand 5	A	141	144	parallel

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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	234	first strand
Strand 2	A	245	252	anti-parallel
Strand 3	A	261	267	anti-parallel
Strand 4	A	168	176	parallel
Strand 5	A	278	283	anti-parallel
Strand 6	A	286	291	anti-parallel
Strand 7	A	297	302	anti-parallel
Strand 8	A	307	311	anti-parallel
Strand 9	C	307	311	anti-parallel
Strand 10	C	294	302	anti-parallel
Strand 11	C	286	291	anti-parallel
Strand 12	C	278	282	anti-parallel
Strand 13	C	170	176	anti-parallel
Strand 14	C	261	267	parallel
Strand 15	C	245	252	anti-parallel
Strand 16	C	226	234	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	48	first strand
Strand 2	B	15	20	parallel
Strand 3	B	90	93	parallel
Strand 4	B	113	116	parallel
Strand 5	B	141	143	parallel

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There are 16 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	234	first strand
Strand 2	B	245	252	anti-parallel
Strand 3	B	261	267	anti-parallel
Strand 4	B	168	176	parallel
Strand 5	B	278	283	anti-parallel
Strand 6	B	286	291	anti-parallel
Strand 7	B	297	302	anti-parallel
Strand 8	B	307	311	anti-parallel
Strand 9	D	307	311	anti-parallel
Strand 10	D	297	302	anti-parallel
Strand 11	D	286	291	anti-parallel
Strand 12	D	278	283	anti-parallel
Strand 13	D	168	176	anti-parallel
Strand 14	D	261	267	parallel
Strand 15	D	245	252	anti-parallel
Strand 16	D	226	234	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	48	first strand
Strand 2	C	15	21	parallel
Strand 3	C	90	94	parallel
Strand 4	C	113	116	parallel
Strand 5	C	141	143	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	48	first strand
Strand 2	D	15	20	parallel
Strand 3	D	90	93	parallel
Strand 4	D	113	117	parallel
Strand 5	D	141	144	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V5N

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5N