Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V5Q entry

There are 2 chains in PDB entry 3V5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3PRO 832
B
 GLY -3PRO 832
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3V5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
534 536Right-handed 310
Helix 2
2
A
578 595Right-handed alpha
Helix 3
3
A
624 632Right-handed alpha
Helix 4
4
A
652 673Right-handed alpha
Helix 5
5
A
681 683Right-handed 310
Helix 6
6
A
689 691Right-handed 310
Helix 7
7
A
705 709Right-handed 310
Helix 8
8
A
733 737Right-handed 310
Helix 9
9
A
738 745Right-handed alpha
Helix 10
10
A
748 764Right-handed alpha
Helix 11
11
A
775 786Right-handed alpha
Helix 12
12
A
796 807Right-handed alpha
Helix 13
13
A
810 814Right-handed 310
Helix 14
14
A
816 830Right-handed alpha
Helix 15
15
B
534 536Right-handed 310
Helix 16
16
B
578 595Right-handed alpha
Helix 17
17
B
625 631Right-handed alpha
Helix 18
18
B
652 673Right-handed alpha
Helix 19
19
B
681 683Right-handed 310
Helix 20
20
B
689 691Right-handed 310
Helix 21
21
B
705 709Right-handed 310
Helix 22
22
B
733 737Right-handed 310
Helix 23
23
B
738 745Right-handed alpha
Helix 24
24
B
748 764Right-handed alpha
Helix 25
25
B
775 786Right-handed alpha
Helix 26
26
B
796 807Right-handed alpha
Helix 27
27
B
810 814Right-handed 310
Helix 28
28
B
816 830Right-handed alpha
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There are 4 sheets in PDB entry 3V5Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 533first strand
Strand 2
A
603 607parallel
Strand 3
A
614 618anti-parallel
Strand 4
A
566 573anti-parallel
Strand 5
A
552 558anti-parallel
Strand 6
A
538 543anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
685 687first strand
Strand 2
A
693 695anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
532 533first strand
Strand 2
B
603 607parallel
Strand 3
B
614 618anti-parallel
Strand 4
B
566 573anti-parallel
Strand 5
B
551 558anti-parallel
Strand 6
B
538 543anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
623 624first strand
Strand 2
B
685 687anti-parallel
Strand 3
B
693 695anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il