Analysis of interatomic Contacts of Structural Units in PDB entry:
3V5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V5R entry

There are 2 chains in PDB entry 3V5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 19GLN 520
B
 PHE 19GLN 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3V5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 35Right-handed alpha
Helix 2
2
A
55 59Right-handed 310
Helix 3
3
A
118 136Right-handed alpha
Helix 4
4
A
136 141Right-handed alpha
Helix 5
5
A
161 180Right-handed alpha
Helix 6
6
A
186 196Right-handed alpha
Helix 7
7
A
197 202Right-handed alpha
Helix 8
8
A
207 216Right-handed alpha
Helix 9
9
A
265 284Right-handed alpha
Helix 10
10
A
301 314Right-handed alpha
Helix 11
11
A
323 343Right-handed alpha
Helix 12
12
A
344 346Right-handed 310
Helix 13
13
A
350 358Right-handed alpha
Helix 14
14
A
361 370Right-handed alpha
Helix 15
15
A
381 405Right-handed alpha
Helix 16
16
A
410 432Right-handed alpha
Helix 17
17
A
437 450Right-handed alpha
Helix 18
18
A
477 489Right-handed alpha
Helix 19
19
A
489 494Right-handed alpha
Helix 20
20
A
498 505Right-handed alpha
Helix 21
21
B
21 35Right-handed alpha
Helix 22
22
B
55 59Right-handed 310
Helix 23
23
B
118 136Right-handed alpha
Helix 24
24
B
136 141Right-handed alpha
Helix 25
25
B
161 180Right-handed alpha
Helix 26
26
B
186 196Right-handed alpha
Helix 27
27
B
197 202Right-handed alpha
Helix 28
28
B
207 216Right-handed alpha
Helix 29
29
B
265 284Right-handed alpha
Helix 30
30
B
301 314Right-handed alpha
Helix 31
31
B
323 343Right-handed alpha
Helix 32
32
B
344 346Right-handed 310
Helix 33
33
B
350 358Right-handed alpha
Helix 34
34
B
361 370Right-handed alpha
Helix 35
35
B
381 405Right-handed alpha
Helix 36
36
B
410 432Right-handed alpha
Helix 37
37
B
437 449Right-handed alpha
Helix 38
38
B
477 489Right-handed alpha
Helix 39
39
B
489 494Right-handed alpha
Helix 40
40
B
498 505Right-handed alpha
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There are 6 sheets in PDB entry 3V5R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
148 154parallel
Strand 4
A
63 77anti-parallel
Strand 5
A
40 51anti-parallel
Strand 6
A
516 519anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
231 236anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 458first strand
Strand 2
A
465 472anti-parallel
Strand 3
A
244 251anti-parallel
Strand 4
A
506 509anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
84 89anti-parallel
Strand 3
B
147 154parallel
Strand 4
B
63 78anti-parallel
Strand 5
B
40 51anti-parallel
Strand 6
B
516 519anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 225first strand
Strand 2
B
231 236anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 458first strand
Strand 2
B
465 472anti-parallel
Strand 3
B
244 251anti-parallel
Strand 4
B
506 509anti-parallel
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