Analysis of interatomic Contacts of Structural Units in PDB entry:
3V62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V62 entry

There are 16 chains in PDB entry 3V62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 20LEU 26
A
 VAL 28PHE 37
A
 ILE 39ILE 39
A
 THR 42ALA 53
A
 ARG 55GLY 57
A
 GLU 59GLY 98
B
 MET 1ASN 255
C
 SER 1148ASP 1174
D
 PRO 20LEU 26
D
 VAL 28PHE 37
D
 ILE 39ILE 39
D
 THR 42ALA 53
D
 ARG 55GLY 57
D
 GLU 59GLY 98
E
 MET 1ASN 255
F
 SER 1148ASP 1174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3V62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 57Right-handed alpha
Helix 2
2
A
59 61Right-handed 310
Helix 3
3
A
78 82Right-handed 310
Helix 4
4
B
8 21Right-handed alpha
Helix 5
5
B
72 81Right-handed alpha
Helix 6
6
B
121 125Right-handed 310
Helix 7
7
B
141 155Right-handed alpha
Helix 8
8
B
190 194Right-handed 310
Helix 9
9
B
209 216Right-handed alpha
Helix 10
10
B
217 221Right-handed 310
Helix 11
11
C
1151 1161Right-handed alpha
Helix 12
12
D
45 57Right-handed alpha
Helix 13
13
D
59 61Right-handed 310
Helix 14
14
D
78 82Right-handed 310
Helix 15
15
E
8 21Right-handed alpha
Helix 16
16
E
55 57Right-handed 310
Helix 17
17
E
72 81Right-handed alpha
Helix 18
18
E
121 125Right-handed 310
Helix 19
19
E
141 155Right-handed alpha
Helix 20
20
E
190 194Right-handed 310
Helix 21
21
E
209 216Right-handed alpha
Helix 22
22
E
217 221Right-handed 310
Helix 23
23
F
1153 1161Right-handed alpha
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There are 7 sheets in PDB entry 3V62. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
25 29parallel
Strand 5
A
34 38anti-parallel
Strand 6
C
1170 1172parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
88 92anti-parallel
Strand 4
B
98 105anti-parallel
Strand 5
B
110 117anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
46 53anti-parallel
Strand 5
B
244 250anti-parallel
Strand 6
B
233 241anti-parallel
Strand 7
B
224 230anti-parallel
Strand 8
B
135 140anti-parallel
Strand 9
B
196 199anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 208first strand
Strand 2
B
157 163anti-parallel
Strand 3
B
166 173anti-parallel
Strand 4
B
176 182anti-parallel
Strand 5
E
110 117anti-parallel
Strand 6
E
98 105anti-parallel
Strand 7
E
87 92anti-parallel
Strand 8
E
2 6anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 71first strand
Strand 2
D
63 67anti-parallel
Strand 3
D
87 93anti-parallel
Strand 4
D
25 29parallel
Strand 5
D
34 39anti-parallel
Strand 6
F
1170 1173parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 71first strand
Strand 2
E
25 31anti-parallel
Strand 3
E
34 40anti-parallel
Strand 4
E
46 53anti-parallel
Strand 5
E
244 250anti-parallel
Strand 6
E
233 241anti-parallel
Strand 7
E
224 230anti-parallel
Strand 8
E
135 140anti-parallel
Strand 9
E
196 199anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 182first strand
Strand 2
E
166 173anti-parallel
Strand 3
E
157 163anti-parallel
Strand 4
E
203 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il