Analysis of interatomic Contacts of Structural Units in PDB entry:
3V65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V65 entry

There are 4 chains in PDB entry 3V65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1758	PRO 1948
B	TYR 404	GLN 738
D	CYS 358	GLN 738
C	ALA 1758	PRO 1948

There are 7 helices in PDB entry 3V65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1778	1783	Right-handed alpha
Helix 2	2	A	1931	1936	Right-handed alpha
Helix 3	3	B	607	610	Right-handed 310
Helix 4	4	B	691	695	Right-handed 310
Helix 5	5	D	477	479	Right-handed 310
Helix 6	6	D	691	695	Right-handed 310
Helix 7	7	C	1778	1783	Right-handed alpha

There are 27 sheets in PDB entry 3V65. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1761	1764	first strand
Strand 2	A	1918	1925	anti-parallel
Strand 3	A	1793	1802	anti-parallel
Strand 4	A	1856	1863	anti-parallel
Strand 5	A	1866	1871	anti-parallel
Strand 6	A	1877	1880	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1761	1764	first strand
Strand 2	A	1918	1925	anti-parallel
Strand 3	A	1928	1929	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1770	1773	first strand
Strand 2	A	1893	1896	anti-parallel
Strand 3	A	1807	1813	anti-parallel
Strand 4	A	1821	1827	anti-parallel
Strand 5	A	1830	1836	anti-parallel
Strand 6	A	1842	1845	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1789	1791	first strand
Strand 2	A	1888	1890	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	418	419	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	426	first strand
Strand 2	B	433	435	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	464	first strand
Strand 2	B	450	453	anti-parallel
Strand 3	B	441	445	anti-parallel
Strand 4	B	687	690	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	476	first strand
Strand 2	B	481	486	anti-parallel
Strand 3	B	491	496	anti-parallel
Strand 4	B	502	506	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	519	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	534	537	anti-parallel
Strand 4	B	546	549	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	562	first strand
Strand 2	B	567	572	anti-parallel
Strand 3	B	578	583	anti-parallel
Strand 4	B	590	593	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	606	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	621	625	anti-parallel
Strand 4	B	633	636	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	649	first strand
Strand 2	B	652	657	anti-parallel
Strand 3	B	662	667	anti-parallel
Strand 4	B	675	678	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	714	first strand
Strand 2	B	721	723	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	369	first strand
Strand 2	D	378	379	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	426	first strand
Strand 2	D	433	435	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	464	first strand
Strand 2	D	450	453	anti-parallel
Strand 3	D	441	445	anti-parallel
Strand 4	D	687	690	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	476	first strand
Strand 2	D	481	486	anti-parallel
Strand 3	D	491	496	anti-parallel
Strand 4	D	500	506	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	513	519	first strand
Strand 2	D	524	529	anti-parallel
Strand 3	D	534	539	anti-parallel
Strand 4	D	546	549	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	562	first strand
Strand 2	D	567	572	anti-parallel
Strand 3	D	578	583	anti-parallel
Strand 4	D	590	593	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	600	606	first strand
Strand 2	D	611	616	anti-parallel
Strand 3	D	622	625	anti-parallel
Strand 4	D	633	636	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	643	649	first strand
Strand 2	D	652	657	anti-parallel
Strand 3	D	662	667	anti-parallel
Strand 4	D	675	676	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	714	first strand
Strand 2	D	721	723	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	729	731	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1790	1791	first strand
Strand 2	C	1888	1889	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1877	1878	first strand
Strand 2	C	1866	1871	anti-parallel
Strand 3	C	1856	1863	anti-parallel
Strand 4	C	1798	1801	anti-parallel
Strand 5	C	1919	1921	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1842	1846	first strand
Strand 2	C	1830	1836	anti-parallel
Strand 3	C	1821	1827	anti-parallel
Strand 4	C	1807	1813	anti-parallel
Strand 5	C	1895	1896	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1924	1925	first strand
Strand 2	C	1928	1929	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V65

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V65