Analysis of interatomic Contacts of Structural Units in PDB entry:
3V6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V6I entry

There are 4 chains in PDB entry 3V6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 188
B
 LEU 20PRO 120
X
 LEU 22PRO 120
Y
 SER 2GLY 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3V6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 94Right-handed alpha
Helix 2
2
A
95 97Right-handed 310
Helix 3
3
A
99 115Right-handed alpha
Helix 4
4
A
127 139Right-handed alpha
Helix 5
5
A
167 188Right-handed alpha
Helix 6
6
B
21 119Right-handed alpha
Helix 7
7
X
23 105Right-handed alpha
Helix 8
8
X
106 119Right-handed alpha
Helix 9
9
Y
3 93Right-handed alpha
Helix 10
10
Y
99 115Right-handed alpha
Helix 11
11
Y
127 130Right-handed 310
Helix 12
12
Y
131 139Right-handed alpha
Helix 13
13
Y
167 188Right-handed alpha
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There are 2 sheets in PDB entry 3V6I. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
120 123parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
162 166anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
141 144first strand
Strand 2
Y
120 123parallel
Strand 3
Y
151 155anti-parallel
Strand 4
Y
162 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il