Analysis of interatomic Contacts of Structural Units in PDB entry:
3V6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V6M entry

There are 7 chains in PDB entry 3V6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 31	SER 292
B	PHE 31	SER 292
C	PHE 31	SER 292
D	PHE 31	SER 292
F	ASP 32	SER 292
G	PHE 31	SER 292
I	PHE 31	LEU 91

There are 63 helices in PDB entry 3V6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	56	60	Right-handed 310
Helix 2	2	A	66	80	Right-handed alpha
Helix 3	3	A	92	104	Right-handed alpha
Helix 4	4	A	136	141	Right-handed alpha
Helix 5	5	A	142	144	Right-handed 310
Helix 6	6	A	148	152	Right-handed 310
Helix 7	7	A	226	240	Right-handed alpha
Helix 8	8	A	244	259	Right-handed alpha
Helix 9	9	B	56	60	Right-handed 310
Helix 10	10	B	66	81	Right-handed alpha
Helix 11	11	B	92	104	Right-handed alpha
Helix 12	12	B	136	141	Right-handed alpha
Helix 13	13	B	142	144	Right-handed 310
Helix 14	14	B	148	152	Right-handed 310
Helix 15	15	B	226	240	Right-handed alpha
Helix 16	16	B	244	259	Right-handed alpha
Helix 17	17	C	56	60	Right-handed 310
Helix 18	18	C	66	81	Right-handed alpha
Helix 19	19	C	92	104	Right-handed alpha
Helix 20	20	C	136	141	Right-handed alpha
Helix 21	21	C	142	144	Right-handed 310
Helix 22	22	C	148	152	Right-handed 310
Helix 23	23	C	226	240	Right-handed alpha
Helix 24	24	C	244	259	Right-handed alpha
Helix 25	25	D	56	60	Right-handed 310
Helix 26	26	D	66	81	Right-handed alpha
Helix 27	27	D	92	104	Right-handed alpha
Helix 28	28	D	136	142	Right-handed alpha
Helix 29	29	D	148	152	Right-handed 310
Helix 30	30	D	226	240	Right-handed alpha
Helix 31	31	D	244	259	Right-handed alpha
Helix 32	32	F	56	60	Right-handed 310
Helix 33	33	F	66	81	Right-handed alpha
Helix 34	34	F	92	104	Right-handed alpha
Helix 35	35	F	136	141	Right-handed alpha
Helix 36	36	F	142	144	Right-handed 310
Helix 37	37	F	148	152	Right-handed 310
Helix 38	38	F	226	240	Right-handed alpha
Helix 39	39	F	244	259	Right-handed alpha
Helix 40	40	G	56	60	Right-handed 310
Helix 41	41	G	66	81	Right-handed alpha
Helix 42	42	G	92	104	Right-handed alpha
Helix 43	43	G	136	141	Right-handed alpha
Helix 44	44	G	142	144	Right-handed 310
Helix 45	45	G	148	152	Right-handed 310
Helix 46	46	G	226	240	Right-handed alpha
Helix 47	47	G	244	259	Right-handed alpha
Helix 48	48	I	56	60	Right-handed 310
Helix 49	49	I	66	81	Right-handed alpha
Helix 50	50	I	92	104	Right-handed alpha
Helix 51	51	I	136	141	Right-handed alpha
Helix 52	52	I	142	144	Right-handed 310
Helix 53	53	I	148	152	Right-handed 310
Helix 54	54	I	226	240	Right-handed alpha
Helix 55	55	I	244	259	Right-handed alpha
Helix 56	56	J	56	60	Right-handed 310
Helix 57	57	J	66	81	Right-handed alpha
Helix 58	58	J	92	106	Right-handed alpha
Helix 59	59	J	136	141	Right-handed alpha
Helix 60	60	J	142	144	Right-handed 310
Helix 61	61	J	148	152	Right-handed 310
Helix 62	62	J	226	240	Right-handed alpha
Helix 63	63	J	244	259	Right-handed alpha

There are 12 sheets in PDB entry 3V6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	46	51	parallel
Strand 3	A	114	120	parallel
Strand 4	A	156	162	parallel
Strand 5	A	206	210	parallel
Strand 6	A	277	280	anti-parallel
Strand 7	B	277	280	anti-parallel
Strand 8	B	206	210	anti-parallel
Strand 9	B	156	162	parallel
Strand 10	B	114	120	parallel
Strand 11	B	46	51	parallel
Strand 12	B	84	89	parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	128	first strand
Strand 2	B	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	46	51	parallel
Strand 3	C	114	120	parallel
Strand 4	C	156	162	parallel
Strand 5	C	206	210	parallel
Strand 6	C	277	280	anti-parallel
Strand 7	D	277	280	anti-parallel
Strand 8	D	206	210	anti-parallel
Strand 9	D	156	162	parallel
Strand 10	D	114	120	parallel
Strand 11	D	46	51	parallel
Strand 12	D	84	89	parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	128	first strand
Strand 2	D	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	89	first strand
Strand 2	F	46	51	parallel
Strand 3	F	114	120	parallel
Strand 4	F	156	162	parallel
Strand 5	F	206	210	parallel
Strand 6	F	277	280	anti-parallel
Strand 7	G	277	280	anti-parallel
Strand 8	G	206	210	anti-parallel
Strand 9	G	156	162	parallel
Strand 10	G	114	120	parallel
Strand 11	G	46	51	parallel
Strand 12	G	84	89	parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	128	first strand
Strand 2	F	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	89	first strand
Strand 2	I	46	51	parallel
Strand 3	I	114	120	parallel
Strand 4	I	156	162	parallel
Strand 5	I	206	210	parallel
Strand 6	I	277	280	anti-parallel
Strand 7	J	277	280	anti-parallel
Strand 8	J	206	210	anti-parallel
Strand 9	J	156	162	parallel
Strand 10	J	114	120	parallel
Strand 11	J	46	51	parallel
Strand 12	J	84	89	parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	128	first strand
Strand 2	I	133	135	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	128	first strand
Strand 2	J	133	135	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V6M