Analysis of interatomic Contacts of Structural Units in PDB entry:
3V6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V6O entry

There are 6 chains in PDB entry 3V6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 431VAL 633
B
 VAL 430THR 631
C
 GLU 3THR 222
D
 GLU 3CYS 221
E
 ILE 4CYS 216
F
 ILE 4CYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3V6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
530 535Right-handed 310
Helix 2
2
B
530 535Right-handed 310
Helix 3
3
C
63 66Right-handed 310
Helix 4
4
C
75 77Right-handed 310
Helix 5
5
C
88 92Right-handed 310
Helix 6
6
C
162 164Right-handed 310
Helix 7
7
C
192 194Right-handed 310
Helix 8
8
C
206 209Right-handed 310
Helix 9
9
D
63 66Right-handed 310
Helix 10
10
D
88 92Right-handed 310
Helix 11
11
D
162 164Right-handed 310
Helix 12
12
D
206 209Right-handed 310
Helix 13
13
E
81 85Right-handed 310
Helix 14
14
E
123 130Right-handed alpha
Helix 15
15
E
185 190Right-handed alpha
Helix 16
16
F
81 85Right-handed 310
Helix 17
17
F
123 129Right-handed alpha
Helix 18
18
F
185 189Right-handed alpha
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There are 32 sheets in PDB entry 3V6O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
445 449anti-parallel
Strand 3
A
496 500anti-parallel
Strand 4
A
488 490anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
461 468anti-parallel
Strand 3
A
509 516anti-parallel
Strand 4
A
522 523anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
461 468anti-parallel
Strand 3
A
509 516anti-parallel
Strand 4
A
527 529anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 548first strand
Strand 2
A
553 557anti-parallel
Strand 3
A
595 598anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 588first strand
Strand 2
A
568 576anti-parallel
Strand 3
A
607 615anti-parallel
Strand 4
A
629 630anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
435 438first strand
Strand 2
B
445 450anti-parallel
Strand 3
B
495 500anti-parallel
Strand 4
B
489 490anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 486first strand
Strand 2
B
461 468anti-parallel
Strand 3
B
509 517anti-parallel
Strand 4
B
520 523anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 486first strand
Strand 2
B
461 468anti-parallel
Strand 3
B
509 517anti-parallel
Strand 4
B
527 529anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 548first strand
Strand 2
B
553 557anti-parallel
Strand 3
B
596 598anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
584 588first strand
Strand 2
B
568 576anti-parallel
Strand 3
B
607 615anti-parallel
Strand 4
B
629 630anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
20 27anti-parallel
Strand 3
C
79 84anti-parallel
Strand 4
C
69 74anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
113 117parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
36 41anti-parallel
Strand 5
C
48 53anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
113 117parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
105 109anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 130first strand
Strand 2
C
141 151anti-parallel
Strand 3
C
181 190anti-parallel
Strand 4
C
169 171anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 130first strand
Strand 2
C
141 151anti-parallel
Strand 3
C
181 190anti-parallel
Strand 4
C
175 176anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
200 205anti-parallel
Strand 3
C
210 215anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 9first strand
Strand 2
D
20 27anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
69 74anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
113 117parallel
Strand 3
D
93 101anti-parallel
Strand 4
D
36 41anti-parallel
Strand 5
D
48 53anti-parallel
Strand 6
D
59 61anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
113 117parallel
Strand 3
D
93 101anti-parallel
Strand 4
D
105 109anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 130first strand
Strand 2
D
141 151anti-parallel
Strand 3
D
180 190anti-parallel
Strand 4
D
169 171anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 130first strand
Strand 2
D
141 151anti-parallel
Strand 3
D
180 190anti-parallel
Strand 4
D
175 177anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 160first strand
Strand 2
D
200 205anti-parallel
Strand 3
D
210 215anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 7first strand
Strand 2
E
21 27anti-parallel
Strand 3
E
72 77anti-parallel
Strand 4
E
64 69anti-parallel
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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
104 109parallel
Strand 3
E
87 92anti-parallel
Strand 4
E
35 40anti-parallel
Strand 5
E
47 51anti-parallel
Strand 6
E
55 56anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
104 109parallel
Strand 3
E
87 92anti-parallel
Strand 4
E
99 100anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 120first strand
Strand 2
E
131 141anti-parallel
Strand 3
E
175 184anti-parallel
Strand 4
E
161 165anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
155 157first strand
Strand 2
E
147 152anti-parallel
Strand 3
E
193 199anti-parallel
Strand 4
E
207 212anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 7first strand
Strand 2
F
21 27anti-parallel
Strand 3
F
72 77anti-parallel
Strand 4
F
64 69anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
104 109parallel
Strand 3
F
87 92anti-parallel
Strand 4
F
35 40anti-parallel
Strand 5
F
47 51anti-parallel
Strand 6
F
55 56anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
104 109parallel
Strand 3
F
87 92anti-parallel
Strand 4
F
99 100anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
116 120first strand
Strand 2
F
131 141anti-parallel
Strand 3
F
175 184anti-parallel
Strand 4
F
161 165anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
155 157first strand
Strand 2
F
147 152anti-parallel
Strand 3
F
193 199anti-parallel
Strand 4
F
207 212anti-parallel
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