Analysis of interatomic Contacts of Structural Units in PDB entry:
3V6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V6Z entry

There are 6 chains in PDB entry 3V6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1GLY 224
B
 ASN 1ASN 219
C
 GLU 1GLY 224
D
 ASN 1ASN 219
E
 CYS 4SER 151
F
 CYS 4SER 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3V6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
87 91Right-handed 310
Helix 3
3
A
101 104Right-handed 310
Helix 4
4
A
166 168Right-handed 310
Helix 5
5
B
85 89Right-handed 310
Helix 6
6
B
128 134Right-handed alpha
Helix 7
7
B
190 195Right-handed alpha
Helix 8
8
C
28 32Right-handed 310
Helix 9
9
C
87 91Right-handed 310
Helix 10
10
C
101 104Right-handed 310
Helix 11
11
C
166 168Right-handed 310
Helix 12
12
D
85 89Right-handed 310
Helix 13
13
D
128 134Right-handed alpha
Helix 14
14
D
190 195Right-handed alpha
Helix 15
15
E
16 20Right-handed 310
Helix 16
16
E
22 27Right-handed alpha
Helix 17
17
E
28 29Right-handed 310
Helix 18
18
E
30 34Right-handed 310
Helix 19
19
E
36 53Right-handed alpha
Helix 20
20
E
59 86Right-handed alpha
Helix 21
21
E
93 100Right-handed alpha
Helix 22
22
E
101 120Right-handed alpha
Helix 23
23
E
121 138Right-handed alpha
Helix 24
24
F
16 20Right-handed 310
Helix 25
25
F
22 27Right-handed alpha
Helix 26
26
F
28 29Right-handed 310
Helix 27
27
F
30 34Right-handed 310
Helix 28
28
F
36 53Right-handed alpha
Helix 29
29
F
59 86Right-handed alpha
Helix 30
30
F
93 100Right-handed alpha
Helix 31
31
F
101 120Right-handed alpha
Helix 32
32
F
121 138Right-handed alpha
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There are 20 sheets in PDB entry 3V6Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 59anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
110 113anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
145 155anti-parallel
Strand 3
A
184 194anti-parallel
Strand 4
A
173 181anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
203 209anti-parallel
Strand 3
A
214 220anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
109 114parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
39 44anti-parallel
Strand 5
B
51 55anti-parallel
Strand 6
B
59 60anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
109 114parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
104 105anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
136 146anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
166 170anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
198 205anti-parallel
Strand 4
B
212 217anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
117 121parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 59anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
117 121parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
110 113anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
145 155anti-parallel
Strand 3
C
184 194anti-parallel
Strand 4
C
173 181anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 164first strand
Strand 2
C
203 209anti-parallel
Strand 3
C
214 220anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
76 81anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
39 44anti-parallel
Strand 5
D
51 55anti-parallel
Strand 6
D
59 60anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
109 114parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
104 105anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
121 125first strand
Strand 2
D
136 146anti-parallel
Strand 3
D
180 189anti-parallel
Strand 4
D
166 170anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 162first strand
Strand 2
D
151 157anti-parallel
Strand 3
D
198 205anti-parallel
Strand 4
D
212 217anti-parallel
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