Analysis of interatomic Contacts of Structural Units in PDB entry:
3V77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V77 entry

There are 6 chains in PDB entry 3V77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ILE 224
B	MSE 1	ILE 224
C	MSE 1	ILE 224
D	MSE 1	ILE 224
E	MSE 1	ILE 224
F	MSE 1	SER 204

There are 41 helices in PDB entry 3V77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	32	Right-handed alpha
Helix 2	2	A	84	91	Right-handed alpha
Helix 3	3	A	104	113	Right-handed alpha
Helix 4	4	A	117	122	Right-handed alpha
Helix 5	5	A	139	144	Right-handed 310
Helix 6	6	A	163	165	Right-handed 310
Helix 7	7	A	168	180	Right-handed alpha
Helix 8	8	B	25	32	Right-handed alpha
Helix 9	9	B	84	91	Right-handed alpha
Helix 10	10	B	104	114	Right-handed alpha
Helix 11	11	B	117	122	Right-handed alpha
Helix 12	12	B	139	144	Right-handed 310
Helix 13	13	B	168	180	Right-handed alpha
Helix 14	14	C	25	32	Right-handed alpha
Helix 15	15	C	84	91	Right-handed alpha
Helix 16	16	C	104	113	Right-handed alpha
Helix 17	17	C	117	122	Right-handed alpha
Helix 18	18	C	139	144	Right-handed 310
Helix 19	19	C	163	165	Right-handed 310
Helix 20	20	C	168	180	Right-handed alpha
Helix 21	21	D	25	32	Right-handed alpha
Helix 22	22	D	84	91	Right-handed alpha
Helix 23	23	D	104	114	Right-handed alpha
Helix 24	24	D	117	122	Right-handed alpha
Helix 25	25	D	141	144	Right-handed 310
Helix 26	26	D	163	165	Right-handed 310
Helix 27	27	D	168	180	Right-handed alpha
Helix 28	28	E	25	32	Right-handed alpha
Helix 29	29	E	84	91	Right-handed alpha
Helix 30	30	E	104	114	Right-handed alpha
Helix 31	31	E	117	122	Right-handed alpha
Helix 32	32	E	140	144	Right-handed 310
Helix 33	33	E	163	165	Right-handed 310
Helix 34	34	E	168	177	Right-handed alpha
Helix 35	35	F	25	32	Right-handed alpha
Helix 36	36	F	84	91	Right-handed alpha
Helix 37	37	F	104	114	Right-handed alpha
Helix 38	38	F	117	122	Right-handed alpha
Helix 39	39	F	141	144	Right-handed 310
Helix 40	40	F	163	165	Right-handed 310
Helix 41	41	F	168	180	Right-handed alpha

There are 28 sheets in PDB entry 3V77. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	9	10	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	17	22	anti-parallel
Strand 3	A	187	189	parallel
Strand 4	A	70	76	anti-parallel
Strand 5	A	92	99	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	127	129	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	214	224	parallel
Strand 3	A	204	211	anti-parallel
Strand 4	A	146	152	anti-parallel
Strand 5	A	155	161	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	66	68	anti-parallel
Strand 3	A	197	198	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	9	10	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	187	189	parallel
Strand 4	B	70	76	anti-parallel
Strand 5	B	92	99	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	127	129	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	214	223	parallel
Strand 3	B	204	211	anti-parallel
Strand 4	B	146	152	anti-parallel
Strand 5	B	155	161	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	66	68	anti-parallel
Strand 3	B	197	198	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	46	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	187	189	parallel
Strand 4	C	70	76	anti-parallel
Strand 5	C	92	99	anti-parallel
Strand 6	C	133	134	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	127	129	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	214	224	parallel
Strand 3	C	204	211	anti-parallel
Strand 4	C	146	152	anti-parallel
Strand 5	C	155	161	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	66	68	anti-parallel
Strand 3	C	197	198	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	9	10	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	187	189	parallel
Strand 4	D	70	76	anti-parallel
Strand 5	D	92	99	anti-parallel
Strand 6	D	133	134	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	127	129	parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	214	223	parallel
Strand 3	D	204	211	anti-parallel
Strand 4	D	146	152	anti-parallel
Strand 5	D	155	161	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	66	68	anti-parallel
Strand 3	D	197	198	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	46	first strand
Strand 2	E	17	22	anti-parallel
Strand 3	E	187	189	parallel
Strand 4	E	70	76	anti-parallel
Strand 5	E	92	99	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	127	129	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	214	223	parallel
Strand 3	E	204	211	anti-parallel
Strand 4	E	146	152	anti-parallel
Strand 5	E	155	161	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	66	68	anti-parallel
Strand 3	E	197	198	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	9	10	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	46	first strand
Strand 2	F	17	22	anti-parallel
Strand 3	F	187	189	parallel
Strand 4	F	70	76	anti-parallel
Strand 5	F	92	99	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	52	first strand
Strand 2	F	127	129	parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	214	224	parallel
Strand 3	F	204	211	anti-parallel
Strand 4	F	146	152	anti-parallel
Strand 5	F	155	161	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	66	68	anti-parallel
Strand 3	F	197	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V77

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V77