Analysis of interatomic Contacts of Structural Units in PDB entry:
3V79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V79 entry

There are 6 chains in PDB entry 3V79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 THR 1884VAL 2120
C
 ARG 11PRO 434
M
 HIS 16ARG 70
X
 G 0 A 17
Y
 T 101 C 118
R
 LYS 936GLU 954
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3V79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
K
1911 1916Right-handed alpha
Helix 2
2
K
1931 1939Right-handed alpha
Helix 3
3
K
1941 1951Right-handed alpha
Helix 4
4
K
1964 1972Right-handed alpha
Helix 5
5
K
1974 1983Right-handed alpha
Helix 6
6
K
1998 2006Right-handed alpha
Helix 7
7
K
2010 2018Right-handed alpha
Helix 8
8
K
2031 2039Right-handed alpha
Helix 9
9
K
2041 2051Right-handed alpha
Helix 10
10
K
2064 2073Right-handed alpha
Helix 11
11
K
2074 2084Right-handed alpha
Helix 12
12
K
2097 2106Right-handed alpha
Helix 13
13
K
2107 2117Right-handed alpha
Helix 14
14
C
18 28Right-handed alpha
Helix 15
15
C
64 75Right-handed alpha
Helix 16
16
C
351 354Right-handed 310
Helix 17
17
C
393 397Right-handed 310
Helix 18
18
M
17 69Right-handed alpha
Helix 19
19
R
950 954Right-handed 310
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There are 12 sheets in PDB entry 3V79. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 39first strand
Strand 2
C
319 326anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 43first strand
Strand 2
C
147 150parallel
Strand 3
C
124 125anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
86 91anti-parallel
Strand 3
C
127 132anti-parallel
Strand 4
C
138 143anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 173first strand
Strand 2
C
206 211anti-parallel
Strand 3
C
233 238anti-parallel
Strand 4
C
248 254anti-parallel
Strand 5
C
272 275anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 173first strand
Strand 2
C
206 211anti-parallel
Strand 3
C
233 238anti-parallel
Strand 4
C
248 254anti-parallel
Strand 5
C
257 259anti-parallel
Strand 6
C
305 307anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 177first strand
Strand 2
C
187 188anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
195 196anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
243 244first strand
Strand 2
R
943 944parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
284 286first strand
Strand 2
C
291 293anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 349first strand
Strand 2
C
356 362anti-parallel
Strand 3
C
386 390anti-parallel
Strand 4
C
379 383anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 377first strand
Strand 2
C
368 372anti-parallel
Strand 3
C
413 416anti-parallel
Strand 4
C
421 423anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
408 409first strand
Strand 2
C
429 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il