Analysis of interatomic Contacts of Structural Units in PDB entry:
3V7Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V7Q entry

There are 3 chains in PDB entry 3V7Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LEU 99
B
 GLY 103LEU 199
C
 GLY 203LEU 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3V7Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
22 32Right-handed alpha
Helix 3
3
A
45 59Right-handed alpha
Helix 4
4
A
68 76Right-handed alpha
Helix 5
5
A
88 99Right-handed alpha
Helix 6
6
B
105 116Right-handed alpha
Helix 7
7
B
122 132Right-handed alpha
Helix 8
8
B
145 160Right-handed alpha
Helix 9
9
B
168 176Right-handed alpha
Helix 10
10
B
188 198Right-handed alpha
Helix 11
11
C
205 216Right-handed alpha
Helix 12
12
C
222 232Right-handed alpha
Helix 13
13
C
245 259Right-handed alpha
Helix 14
14
C
268 276Right-handed alpha
Helix 15
15
C
288 299Right-handed alpha
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There are 3 sheets in PDB entry 3V7Q. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
63 66parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
183 186anti-parallel
Strand 3
B
137 141anti-parallel
Strand 4
B
163 166parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
219 221first strand
Strand 2
C
283 286anti-parallel
Strand 3
C
237 241anti-parallel
Strand 4
C
263 266parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il