Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8B entry

There are 4 chains in PDB entry 3V8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ARG 260
B
 PRO 4ARG 260
C
 PRO 6ARG 260
D
 SER 5ARG 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3V8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
65 81Right-handed alpha
Helix 4
4
A
103 115Right-handed alpha
Helix 5
5
A
115 133Right-handed alpha
Helix 6
6
A
154 175Right-handed alpha
Helix 7
7
A
202 207Right-handed alpha
Helix 8
8
A
217 221Right-handed 310
Helix 9
9
A
226 238Right-handed alpha
Helix 10
10
A
239 243Right-handed 310
Helix 11
11
A
255 260Right-handed alpha
Helix 12
12
B
15 28Right-handed alpha
Helix 13
13
B
38 52Right-handed alpha
Helix 14
14
B
65 81Right-handed alpha
Helix 15
15
B
103 133Right-handed alpha
Helix 16
16
B
154 177Right-handed alpha
Helix 17
17
B
202 207Right-handed alpha
Helix 18
18
B
217 221Right-handed 310
Helix 19
19
B
226 239Right-handed alpha
Helix 20
20
B
240 243Right-handed 310
Helix 21
21
B
255 260Right-handed alpha
Helix 22
22
C
15 28Right-handed alpha
Helix 23
23
C
38 52Right-handed alpha
Helix 24
24
C
65 81Right-handed alpha
Helix 25
25
C
103 115Right-handed alpha
Helix 26
26
C
115 132Right-handed alpha
Helix 27
27
C
154 176Right-handed alpha
Helix 28
28
C
202 207Right-handed alpha
Helix 29
29
C
217 221Right-handed 310
Helix 30
30
C
226 238Right-handed alpha
Helix 31
31
C
239 243Right-handed 310
Helix 32
32
C
255 260Right-handed alpha
Helix 33
33
D
15 27Right-handed alpha
Helix 34
34
D
38 50Right-handed alpha
Helix 35
35
D
65 81Right-handed alpha
Helix 36
36
D
103 124Right-handed alpha
Helix 37
37
D
125 132Right-handed alpha
Helix 38
38
D
154 175Right-handed alpha
Helix 39
39
D
202 207Right-handed alpha
Helix 40
40
D
217 221Right-handed 310
Helix 41
41
D
226 239Right-handed alpha
Helix 42
42
D
240 243Right-handed 310
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There are 4 sheets in PDB entry 3V8B. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
85 88parallel
Strand 5
A
135 140parallel
Strand 6
A
180 187parallel
Strand 7
A
249 252parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
31 36parallel
Strand 3
B
7 10parallel
Strand 4
B
85 88parallel
Strand 5
B
135 140parallel
Strand 6
B
180 187parallel
Strand 7
B
249 252parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 60first strand
Strand 2
C
31 36parallel
Strand 3
C
7 11parallel
Strand 4
C
85 88parallel
Strand 5
C
135 140parallel
Strand 6
C
180 187parallel
Strand 7
C
249 252parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 60first strand
Strand 2
D
31 36parallel
Strand 3
D
7 11parallel
Strand 4
D
85 88parallel
Strand 5
D
135 140parallel
Strand 6
D
180 187parallel
Strand 7
D
249 252parallel
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