Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8F entry

There are 3 chains in PDB entry 3V8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 7GLU 416
B
 LYS 6GLU 416
C
 TYR 7GLU 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3V8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
22 31Right-handed alpha
Helix 3
3
A
38 43Right-handed alpha
Helix 4
4
A
44 74Right-handed alpha
Helix 5
5
A
79 107Right-handed alpha
Helix 6
6
A
129 136Right-handed alpha
Helix 7
7
A
141 148Right-handed alpha
Helix 8
8
A
150 170Right-handed alpha
Helix 9
9
A
173 220Right-handed alpha
Helix 10
10
A
222 255Right-handed alpha
Helix 11
11
A
257 265Right-handed alpha
Helix 12
12
A
265 276Right-handed alpha
Helix 13
13
A
284 291Right-handed alpha
Helix 14
14
A
297 302Right-handed alpha
Helix 15
15
A
311 330Right-handed alpha
Helix 16
16
A
336 351Right-handed alpha
Helix 17
17
A
357 368Right-handed alpha
Helix 18
18
A
378 387Right-handed alpha
Helix 19
19
A
389 416Right-handed alpha
Helix 20
20
B
13 22Right-handed alpha
Helix 21
21
B
22 31Right-handed alpha
Helix 22
22
B
38 43Right-handed alpha
Helix 23
23
B
44 74Right-handed alpha
Helix 24
24
B
79 107Right-handed alpha
Helix 25
25
B
129 136Right-handed alpha
Helix 26
26
B
141 148Right-handed alpha
Helix 27
27
B
150 170Right-handed alpha
Helix 28
28
B
173 220Right-handed alpha
Helix 29
29
B
222 255Right-handed alpha
Helix 30
30
B
257 265Right-handed alpha
Helix 31
31
B
265 276Right-handed alpha
Helix 32
32
B
284 291Right-handed alpha
Helix 33
33
B
297 302Right-handed alpha
Helix 34
34
B
311 330Right-handed alpha
Helix 35
35
B
336 351Right-handed alpha
Helix 36
36
B
357 368Right-handed alpha
Helix 37
37
B
378 387Right-handed alpha
Helix 38
38
B
389 416Right-handed alpha
Helix 39
39
C
13 22Right-handed alpha
Helix 40
40
C
22 31Right-handed alpha
Helix 41
41
C
38 43Right-handed alpha
Helix 42
42
C
44 74Right-handed alpha
Helix 43
43
C
79 107Right-handed alpha
Helix 44
44
C
129 136Right-handed alpha
Helix 45
45
C
141 148Right-handed alpha
Helix 46
46
C
150 168Right-handed alpha
Helix 47
47
C
173 220Right-handed alpha
Helix 48
48
C
222 255Right-handed alpha
Helix 49
49
C
257 265Right-handed alpha
Helix 50
50
C
265 276Right-handed alpha
Helix 51
51
C
284 291Right-handed alpha
Helix 52
52
C
297 302Right-handed alpha
Helix 53
53
C
311 330Right-handed alpha
Helix 54
54
C
336 351Right-handed alpha
Helix 55
55
C
357 369Right-handed alpha
Helix 56
56
C
376 387Right-handed alpha
Helix 57
57
C
389 416Right-handed alpha
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There are no sheets in PDB entry 3V8F
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il