Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8H entry

There are 4 chains in PDB entry 3V8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 314
B
 MET 1HIS 314
C
 LYS 2GLY 310
D
 LYS 2GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3V8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 15Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
51 64Right-handed alpha
Helix 4
4
A
68 75Right-handed alpha
Helix 5
5
A
80 86Right-handed alpha
Helix 6
6
A
87 92Right-handed alpha
Helix 7
7
A
106 112Right-handed alpha
Helix 8
8
A
123 133Right-handed alpha
Helix 9
9
A
156 168Right-handed alpha
Helix 10
10
A
180 187Right-handed 310
Helix 11
11
A
221 241Right-handed alpha
Helix 12
12
A
260 270Right-handed alpha
Helix 13
13
A
286 291Right-handed alpha
Helix 14
14
A
296 301Right-handed alpha
Helix 15
15
A
302 304Right-handed 310
Helix 16
16
B
2 15Right-handed alpha
Helix 17
17
B
39 41Right-handed 310
Helix 18
18
B
51 64Right-handed alpha
Helix 19
19
B
68 75Right-handed alpha
Helix 20
20
B
80 86Right-handed alpha
Helix 21
21
B
87 92Right-handed alpha
Helix 22
22
B
106 112Right-handed alpha
Helix 23
23
B
123 133Right-handed alpha
Helix 24
24
B
156 168Right-handed alpha
Helix 25
25
B
180 187Right-handed 310
Helix 26
26
B
221 241Right-handed alpha
Helix 27
27
B
260 270Right-handed alpha
Helix 28
28
B
286 291Right-handed alpha
Helix 29
29
B
296 301Right-handed alpha
Helix 30
30
B
302 304Right-handed 310
Helix 31
31
C
3 15Right-handed alpha
Helix 32
32
C
51 64Right-handed alpha
Helix 33
33
C
68 75Right-handed alpha
Helix 34
34
C
80 86Right-handed alpha
Helix 35
35
C
87 92Right-handed alpha
Helix 36
36
C
106 112Right-handed alpha
Helix 37
37
C
123 133Right-handed alpha
Helix 38
38
C
156 168Right-handed alpha
Helix 39
39
C
180 184Right-handed 310
Helix 40
40
C
220 241Right-handed alpha
Helix 41
41
C
286 291Right-handed alpha
Helix 42
42
C
296 301Right-handed alpha
Helix 43
43
C
302 304Right-handed 310
Helix 44
44
D
3 15Right-handed alpha
Helix 45
45
D
51 64Right-handed alpha
Helix 46
46
D
68 75Right-handed alpha
Helix 47
47
D
80 86Right-handed alpha
Helix 48
48
D
87 92Right-handed alpha
Helix 49
49
D
106 112Right-handed alpha
Helix 50
50
D
123 133Right-handed alpha
Helix 51
51
D
156 168Right-handed alpha
Helix 52
52
D
180 184Right-handed 310
Helix 53
53
D
220 241Right-handed alpha
Helix 54
54
D
260 267Right-handed alpha
Helix 55
55
D
286 291Right-handed alpha
Helix 56
56
D
296 301Right-handed alpha
Helix 57
57
D
302 304Right-handed 310
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There are 12 sheets in PDB entry 3V8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
26 37anti-parallel
Strand 3
A
243 257anti-parallel
Strand 4
A
206 217parallel
Strand 5
A
193 201anti-parallel
Strand 6
A
175 177anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 120first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
136 143anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 280first strand
Strand 2
A
306 309anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
26 37anti-parallel
Strand 3
B
243 257anti-parallel
Strand 4
B
206 217parallel
Strand 5
B
193 201anti-parallel
Strand 6
B
175 177anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 120first strand
Strand 2
B
146 155anti-parallel
Strand 3
B
136 143anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 280first strand
Strand 2
B
306 309anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
26 37anti-parallel
Strand 3
C
243 257anti-parallel
Strand 4
C
206 217parallel
Strand 5
C
193 201anti-parallel
Strand 6
C
175 177anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 120first strand
Strand 2
C
146 155anti-parallel
Strand 3
C
136 143anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 280first strand
Strand 2
C
306 309anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 17first strand
Strand 2
D
26 37anti-parallel
Strand 3
D
243 257anti-parallel
Strand 4
D
206 217parallel
Strand 5
D
193 201anti-parallel
Strand 6
D
175 177anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 120first strand
Strand 2
D
146 155anti-parallel
Strand 3
D
136 143anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
277 280first strand
Strand 2
D
306 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il