Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8J entry

There is 1 chain in PDB entry 3V8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PHE 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3V8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 15Right-handed alpha
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
31 45Right-handed alpha
Helix 4
4
A
67 77Right-handed alpha
Helix 5
5
A
92 101Right-handed alpha
Helix 6
6
A
148 150Right-handed 310
Helix 7
7
A
151 166Right-handed alpha
Helix 8
8
A
215 219Right-handed 310
Helix 9
9
A
223 227Right-handed 310
Helix 10
10
A
230 234Right-handed 310
Helix 11
11
A
239 261Right-handed alpha
Helix 12
12
A
262 265Right-handed 310
Helix 13
13
A
266 273Right-handed alpha
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There are 3 sheets in PDB entry 3V8J. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
56 61anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
108 114parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
201 211anti-parallel
Strand 5
A
185 196anti-parallel
Strand 6
A
179 182anti-parallel
Strand 7
A
172 175anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
303 307anti-parallel
Strand 3
A
289 297anti-parallel
Strand 4
A
281 284anti-parallel
Strand 5
A
319 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il