Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8K entry

There is 1 chain in PDB entry 3V8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PHE 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3V8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
20 28Right-handed alpha
Helix 3
3
A
31 45Right-handed alpha
Helix 4
4
A
67 78Right-handed alpha
Helix 5
5
A
92 101Right-handed alpha
Helix 6
6
A
120 124Right-handed 310
Helix 7
7
A
145 147Right-handed 310
Helix 8
8
A
148 166Right-handed alpha
Helix 9
9
A
215 219Right-handed 310
Helix 10
10
A
222 226Right-handed 310
Helix 11
11
A
230 234Right-handed 310
Helix 12
12
A
239 261Right-handed alpha
Helix 13
13
A
262 274Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3V8K. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
56 61anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
108 112parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
201 211anti-parallel
Strand 5
A
185 196anti-parallel
Strand 6
A
179 182anti-parallel
Strand 7
A
172 175anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 285first strand
Strand 2
A
288 297anti-parallel
Strand 3
A
303 307anti-parallel
Strand 4
A
312 315anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il