Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8L entry

There is 1 chain in PDB entry 3V8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PHE 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3V8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
31 45Right-handed alpha
Helix 4
4
A
67 77Right-handed alpha
Helix 5
5
A
92 101Right-handed alpha
Helix 6
6
A
120 124Right-handed 310
Helix 7
7
A
145 147Right-handed 310
Helix 8
8
A
148 166Right-handed alpha
Helix 9
9
A
215 219Right-handed 310
Helix 10
10
A
223 227Right-handed 310
Helix 11
11
A
229 234Right-handed 310
Helix 12
12
A
239 261Right-handed alpha
Helix 13
13
A
263 273Right-handed alpha
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There are 3 sheets in PDB entry 3V8L. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
56 61anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 90first strand
Strand 2
A
108 115parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
200 211anti-parallel
Strand 5
A
185 197anti-parallel
Strand 6
A
179 182anti-parallel
Strand 7
A
172 175anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
A
303 307anti-parallel
Strand 3
A
288 297anti-parallel
Strand 4
A
281 285anti-parallel
Strand 5
A
319 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il