Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8O entry

There are 2 chains in PDB entry 3V8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 568GLU 760
B
 LYS 573GLU 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3V8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
578 581Right-handed 310
Helix 2
2
A
600 602Right-handed 310
Helix 3
3
A
666 670Right-handed 310
Helix 4
4
A
674 678Right-handed 310
Helix 5
5
B
578 581Right-handed 310
Helix 6
6
B
600 602Right-handed 310
Helix 7
7
B
666 670Right-handed 310
Helix 8
8
B
674 678Right-handed 310
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There are 11 sheets in PDB entry 3V8O. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 577first strand
Strand 2
A
590 596anti-parallel
Strand 3
A
625 630anti-parallel
Strand 4
A
617 620anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 585first strand
Strand 2
A
654 659parallel
Strand 3
A
636 644anti-parallel
Strand 4
A
604 609anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 585first strand
Strand 2
A
654 659parallel
Strand 3
A
636 644anti-parallel
Strand 4
A
647 648anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 673first strand
Strand 2
A
688 693anti-parallel
Strand 3
A
725 730anti-parallel
Strand 4
A
717 720anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 683first strand
Strand 2
A
754 759parallel
Strand 3
A
737 744anti-parallel
Strand 4
A
702 708anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 683first strand
Strand 2
A
754 759parallel
Strand 3
A
737 744anti-parallel
Strand 4
A
747 748anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
574 577first strand
Strand 2
B
590 596anti-parallel
Strand 3
B
625 630anti-parallel
Strand 4
B
616 620anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
583 585first strand
Strand 2
B
654 659parallel
Strand 3
B
636 644anti-parallel
Strand 4
B
604 609anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
583 585first strand
Strand 2
B
654 659parallel
Strand 3
B
636 644anti-parallel
Strand 4
B
647 648anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
671 673first strand
Strand 2
B
688 693anti-parallel
Strand 3
B
725 730anti-parallel
Strand 4
B
717 720anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
682 683first strand
Strand 2
B
754 759parallel
Strand 3
B
737 743anti-parallel
Strand 4
B
703 708anti-parallel
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