Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8U entry

There are 2 chains in PDB entry 3V8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 37GLN 688
B
GLN 37GLN 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3V8U. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
63 67Right-handed 310
Helix 2
2
A
80 89Right-handed alpha
Helix 3
3
B
63 67Right-handed 310
Helix 4
4
B
80 89Right-handed alpha
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There are 12 sheets in PDB entry 3V8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 69first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
156 169anti-parallel
Strand 4
A
135 149anti-parallel
Strand 5
A
99 100anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 177first strand
Strand 2
A
381 383anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
181 192first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
254 261anti-parallel
Strand 4
A
277 284anti-parallel
Strand 5
A
287 294anti-parallel
Strand 6
A
313 321anti-parallel
Strand 7
A
327 333anti-parallel
Strand 8
A
339 345anti-parallel
Strand 9
A
181 192anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
397 399first strand
Strand 2
A
385 391anti-parallel
Strand 3
A
524 532anti-parallel
Strand 4
A
493 500anti-parallel
Strand 5
A
481 486anti-parallel
Strand 6
A
441 446anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
408 411first strand
Strand 2
A
414 417anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
562 565first strand
Strand 2
A
545 557anti-parallel
Strand 3
A
677 687anti-parallel
Strand 4
A
654 661anti-parallel
Strand 5
A
641 648anti-parallel
Strand 6
A
611 617anti-parallel
Strand 7
A
601 608anti-parallel
Strand 8
A
586 592anti-parallel
Strand 9
A
575 581anti-parallel
Strand 10
A
545 557anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 69first strand
Strand 2
B
41 45anti-parallel
Strand 3
B
156 169anti-parallel
Strand 4
B
135 149anti-parallel
Strand 5
B
99 100anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
175 177first strand
Strand 2
B
381 383anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
181 192first strand
Strand 2
B
242 249anti-parallel
Strand 3
B
254 261anti-parallel
Strand 4
B
277 284anti-parallel
Strand 5
B
287 294anti-parallel
Strand 6
B
313 321anti-parallel
Strand 7
B
327 333anti-parallel
Strand 8
B
339 345anti-parallel
Strand 9
B
181 192anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
397 399first strand
Strand 2
B
385 391anti-parallel
Strand 3
B
524 532anti-parallel
Strand 4
B
493 500anti-parallel
Strand 5
B
481 486anti-parallel
Strand 6
B
441 446anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
408 411first strand
Strand 2
B
414 417anti-parallel
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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
562 565first strand
Strand 2
B
545 557anti-parallel
Strand 3
B
677 687anti-parallel
Strand 4
B
654 661anti-parallel
Strand 5
B
641 648anti-parallel
Strand 6
B
611 617anti-parallel
Strand 7
B
601 608anti-parallel
Strand 8
B
586 592anti-parallel
Strand 9
B
575 581anti-parallel
Strand 10
B
545 557anti-parallel
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