Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V8X entry

There are 2 chains in PDB entry 3V8X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 54	PHE 915
B	LYS 4	GLY 455

There are 44 helices in PDB entry 3V8X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	65	72	Right-handed alpha
Helix 2	2	A	75	80	Right-handed alpha
Helix 3	3	A	144	146	Right-handed 310
Helix 4	4	A	158	163	Right-handed alpha
Helix 5	5	A	177	181	Right-handed 310
Helix 6	6	A	199	201	Right-handed 310
Helix 7	7	A	262	264	Right-handed 310
Helix 8	8	A	268	273	Right-handed alpha
Helix 9	9	A	350	362	Right-handed alpha
Helix 10	10	A	652	658	Right-handed alpha
Helix 11	11	A	817	820	Right-handed 310
Helix 12	12	A	876	881	Right-handed alpha
Helix 13	13	A	882	884	Right-handed 310
Helix 14	14	A	896	901	Right-handed 310
Helix 15	15	B	13	19	Right-handed alpha
Helix 16	16	B	44	53	Right-handed alpha
Helix 17	17	B	64	72	Right-handed alpha
Helix 18	18	B	108	112	Right-handed 310
Helix 19	19	B	128	136	Right-handed alpha
Helix 20	20	B	145	152	Right-handed alpha
Helix 21	21	B	167	172	Right-handed 310
Helix 22	22	B	186	197	Right-handed alpha
Helix 23	23	B	208	214	Right-handed alpha
Helix 24	24	B	216	221	Right-handed alpha
Helix 25	25	B	236	241	Right-handed 310
Helix 26	26	B	260	273	Right-handed alpha
Helix 27	27	B	310	316	Right-handed alpha
Helix 28	28	B	316	329	Right-handed alpha
Helix 29	29	B	348	362	Right-handed alpha
Helix 30	30	B	373	383	Right-handed alpha
Helix 31	31	B	392	402	Right-handed alpha
Helix 32	32	B	417	421	Right-handed 310
Helix 33	33	B	460	468	Right-handed alpha
Helix 34	34	B	475	479	Right-handed 310
Helix 35	35	B	492	496	Right-handed 310
Helix 36	36	B	515	527	Right-handed alpha
Helix 37	37	B	536	541	Right-handed alpha
Helix 38	38	B	555	557	Right-handed 310
Helix 39	39	B	573	577	Right-handed 310
Helix 40	40	B	593	608	Right-handed alpha
Helix 41	41	B	646	652	Right-handed alpha
Helix 42	42	B	652	659	Right-handed alpha
Helix 43	43	B	660	663	Right-handed 310
Helix 44	44	B	668	678	Right-handed alpha

There are 17 sheets in PDB entry 3V8X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	148	155	anti-parallel
Strand 3	A	169	175	anti-parallel
Strand 4	A	109	113	parallel
Strand 5	A	116	117	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	104	105	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	278	first strand
Strand 2	A	257	260	anti-parallel
Strand 3	A	547	560	parallel
Strand 4	A	494	527	anti-parallel
Strand 5	A	465	488	anti-parallel
Strand 6	A	425	447	anti-parallel
Strand 7	A	394	415	anti-parallel
Strand 8	A	325	341	anti-parallel
Strand 9	A	317	319	anti-parallel
Strand 10	A	216	228	anti-parallel

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There are 13 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	341	first strand
Strand 2	A	305	314	anti-parallel
Strand 3	A	216	228	anti-parallel
Strand 4	A	202	213	anti-parallel
Strand 5	A	188	197	anti-parallel
Strand 6	A	906	915	anti-parallel
Strand 7	A	860	867	anti-parallel
Strand 8	A	845	855	anti-parallel
Strand 9	A	804	813	anti-parallel
Strand 10	A	790	798	anti-parallel
Strand 11	A	756	771	anti-parallel
Strand 12	A	717	742	anti-parallel
Strand 13	A	689	712	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	527	first strand
Strand 2	A	575	592	anti-parallel
Strand 3	A	596	610	anti-parallel
Strand 4	A	620	632	anti-parallel
Strand 5	A	638	649	anti-parallel
Strand 6	A	673	686	anti-parallel
Strand 7	A	689	712	anti-parallel
Strand 8	A	775	776	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	287	290	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	250	first strand
Strand 2	A	280	284	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	382	first strand
Strand 2	A	388	390	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	779	first strand
Strand 2	A	822	826	anti-parallel
Strand 3	A	832	836	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	37	38	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	249	253	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	302	304	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	117	119	parallel
Strand 3	B	202	206	parallel
Strand 4	B	94	102	anti-parallel
Strand 5	B	223	226	anti-parallel
Strand 6	B	232	234	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	117	119	parallel
Strand 3	B	202	206	parallel
Strand 4	B	94	102	anti-parallel
Strand 5	B	244	247	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	366	370	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	391	first strand
Strand 2	B	586	589	anti-parallel
Strand 3	B	405	411	anti-parallel
Strand 4	B	637	640	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	449	451	parallel
Strand 3	B	530	534	parallel
Strand 4	B	426	433	anti-parallel
Strand 5	B	559	562	anti-parallel
Strand 6	B	568	570	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	449	451	parallel
Strand 3	B	530	534	parallel
Strand 4	B	426	433	anti-parallel
Strand 5	B	580	582	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V8X

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8X