Analysis of interatomic Contacts of Structural Units in PDB entry:
3V8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V8Y entry

There is 1 chain in PDB entry 3V8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3V8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 28Right-handed alpha
Helix 2
2
A
43 54Right-handed alpha
Helix 3
3
A
69 76Right-handed alpha
Helix 4
4
A
79 87Right-handed alpha
Helix 5
5
A
88 91Right-handed 310
Helix 6
6
A
110 116Right-handed 310
Helix 7
7
A
141 156Right-handed alpha
Helix 8
8
A
161 170Right-handed alpha
Helix 9
9
A
177 181Right-handed 310
Helix 10
10
A
183 187Right-handed 310
Helix 11
11
A
191 196Right-handed alpha
Helix 12
12
A
196 204Right-handed alpha
Helix 13
13
A
205 207Right-handed 310
Helix 14
14
A
217 221Right-handed 310
Helix 15
15
A
242 255Right-handed alpha
Helix 16
16
A
255 262Right-handed alpha
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There are 3 sheets in PDB entry 3V8Y. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
33 38parallel
Strand 3
A
3 9parallel
Strand 4
A
96 100parallel
Strand 5
A
131 138anti-parallel
Strand 6
A
120 123anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
209 211anti-parallel
Strand 3
A
188 189parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
229 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il