Analysis of interatomic Contacts of Structural Units in PDB entry:
3V99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V99 entry

There are 2 chains in PDB entry 3V99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ALA 672
B
 HIS -8LYS 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 3V99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
118 122Right-handed 310
Helix 2
2
A
124 142Right-handed alpha
Helix 3
3
A
159 163Right-handed 310
Helix 4
4
A
164 168Right-handed 310
Helix 5
5
A
178 189Right-handed alpha
Helix 6
6
A
200 205Right-handed 310
Helix 7
7
A
206 212Right-handed alpha
Helix 8
8
A
216 226Right-handed alpha
Helix 9
9
A
228 239Right-handed alpha
Helix 10
10
A
258 263Right-handed alpha
Helix 11
11
A
271 278Right-handed alpha
Helix 12
12
A
301 306Right-handed 310
Helix 13
13
A
343 365Right-handed alpha
Helix 14
14
A
367 386Right-handed alpha
Helix 15
15
A
390 401Right-handed alpha
Helix 16
16
A
402 413Right-handed alpha
Helix 17
17
A
431 440Right-handed alpha
Helix 18
18
A
441 443Right-handed 310
Helix 19
19
A
445 448Right-handed 310
Helix 20
20
A
449 457Right-handed alpha
Helix 21
21
A
468 493Right-handed alpha
Helix 22
22
A
495 501Right-handed alpha
Helix 23
23
A
502 515Right-handed alpha
Helix 24
24
A
520 524Right-handed 310
Helix 25
25
A
531 547Right-handed alpha
Helix 26
26
A
547 555Right-handed alpha
Helix 27
27
A
556 562Right-handed alpha
Helix 28
28
A
563 567Right-handed 310
Helix 29
29
A
583 591Right-handed alpha
Helix 30
30
A
595 609Right-handed alpha
Helix 31
31
A
627 654Right-handed alpha
Helix 32
32
A
663 667Right-handed 310
Helix 33
33
B
118 122Right-handed 310
Helix 34
34
B
124 142Right-handed alpha
Helix 35
35
B
159 163Right-handed 310
Helix 36
36
B
164 168Right-handed 310
Helix 37
37
B
178 187Right-handed alpha
Helix 38
38
B
216 226Right-handed alpha
Helix 39
39
B
228 239Right-handed alpha
Helix 40
40
B
258 263Right-handed alpha
Helix 41
41
B
271 278Right-handed alpha
Helix 42
42
B
287 290Right-handed 310
Helix 43
43
B
301 306Right-handed 310
Helix 44
44
B
343 365Right-handed alpha
Helix 45
45
B
371 386Right-handed alpha
Helix 46
46
B
390 398Right-handed alpha
Helix 47
47
B
399 401Right-handed 310
Helix 48
48
B
402 411Right-handed alpha
Helix 49
49
B
431 440Right-handed alpha
Helix 50
50
B
441 443Right-handed 310
Helix 51
51
B
444 449Right-handed alpha
Helix 52
52
B
449 457Right-handed alpha
Helix 53
53
B
468 493Right-handed alpha
Helix 54
54
B
495 501Right-handed alpha
Helix 55
55
B
502 515Right-handed alpha
Helix 56
56
B
520 524Right-handed 310
Helix 57
57
B
531 547Right-handed alpha
Helix 58
58
B
547 555Right-handed alpha
Helix 59
59
B
556 562Right-handed alpha
Helix 60
60
B
563 567Right-handed 310
Helix 61
61
B
583 591Right-handed alpha
Helix 62
62
B
593 608Right-handed alpha
Helix 63
63
B
627 654Right-handed alpha
Helix 64
64
B
663 667Right-handed 310
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There are 9 sheets in PDB entry 3V99. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
6 12anti-parallel
Strand 3
A
80 88anti-parallel
Strand 4
A
94 103anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
108 112anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
154 155anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
281 285anti-parallel
Strand 3
A
309 314anti-parallel
Strand 4
A
320 326anti-parallel
Strand 5
A
337 338anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-6 -3first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
6 12anti-parallel
Strand 4
B
80 88anti-parallel
Strand 5
B
94 103anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
109 112anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
154 155anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
211 212anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
281 285anti-parallel
Strand 3
B
309 314anti-parallel
Strand 4
B
320 326anti-parallel
Strand 5
B
337 338anti-parallel
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