Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V9E entry

There is 1 chain in PDB entry 3V9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ILE 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3V9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
96 100Right-handed 310
Helix 2
2
A
136 141Right-handed 310
Helix 3
3
A
172 181Right-handed alpha
Helix 4
4
A
302 305Right-handed 310
Helix 5
5
A
335 339Right-handed 310
Helix 6
6
A
381 388Right-handed alpha
Helix 7
7
A
394 397Right-handed 310
Helix 8
8
A
450 454Right-handed 310
Helix 9
9
A
491 497Right-handed alpha
Helix 10
10
A
507 510Right-handed 310
Helix 11
11
A
513 531Right-handed alpha
Helix 12
12
A
532 534Right-handed 310
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There are 7 sheets in PDB entry 3V9E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
15 16anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
30 42anti-parallel
Strand 3
A
70 77parallel
Strand 4
A
115 121anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
143 149parallel
Strand 3
A
126 132anti-parallel
Strand 4
A
86 88anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
158 168anti-parallel
Strand 3
A
225 232parallel
Strand 4
A
273 279anti-parallel
Strand 5
A
248 253anti-parallel
Strand 6
A
256 263anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
307 311parallel
Strand 3
A
286 290anti-parallel
Strand 4
A
239 243anti-parallel
Strand 5
A
265 268anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 369first strand
Strand 2
A
350 361anti-parallel
Strand 3
A
411 418parallel
Strand 4
A
472 478anti-parallel
Strand 5
A
435 441anti-parallel
Strand 6
A
461 462anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
500 505parallel
Strand 3
A
483 489anti-parallel
Strand 4
A
426 430anti-parallel
Strand 5
A
464 467anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il