Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V9F entry

There are 2 chains in PDB entry 3V9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 21	PRO 793
B	PRO 21	LEU 571

There are 21 helices in PDB entry 3V9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	32	Right-handed 310
Helix 2	2	A	592	596	Right-handed 310
Helix 3	3	A	635	639	Right-handed 310
Helix 4	4	A	673	677	Right-handed 310
Helix 5	5	A	714	718	Right-handed 310
Helix 6	6	A	729	733	Right-handed 310
Helix 7	7	B	28	32	Right-handed 310
Helix 8	8	B	461	465	Right-handed 310
Helix 9	9	B	592	596	Right-handed 310
Helix 10	10	B	635	639	Right-handed 310
Helix 11	11	B	673	677	Right-handed 310
Helix 12	12	B	728	733	Right-handed alpha
Helix 13	13	C	28	32	Right-handed 310
Helix 14	14	C	592	596	Right-handed 310
Helix 15	15	C	635	639	Right-handed 310
Helix 16	16	C	673	677	Right-handed 310
Helix 17	17	C	728	733	Right-handed alpha
Helix 18	18	D	592	596	Right-handed 310
Helix 19	19	D	635	639	Right-handed 310
Helix 20	20	D	672	677	Right-handed 310
Helix 21	21	D	728	733	Right-handed alpha

There are 64 sheets in PDB entry 3V9F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	352	355	anti-parallel
Strand 3	A	343	347	anti-parallel
Strand 4	A	332	337	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	57	60	anti-parallel
Strand 4	A	65	68	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	90	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	115	119	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	139	first strand
Strand 2	A	146	151	anti-parallel
Strand 3	A	156	160	anti-parallel
Strand 4	A	165	169	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	189	first strand
Strand 2	A	192	197	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	212	215	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	241	245	anti-parallel
Strand 3	A	248	252	anti-parallel
Strand 4	A	259	260	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	282	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	316	318	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	665	669	anti-parallel
Strand 3	A	658	662	anti-parallel
Strand 4	A	645	652	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	387	first strand
Strand 2	A	393	397	anti-parallel
Strand 3	A	402	406	anti-parallel
Strand 4	A	409	413	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	431	first strand
Strand 2	A	437	441	anti-parallel
Strand 3	A	444	449	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	474	first strand
Strand 2	A	479	484	anti-parallel
Strand 3	A	487	492	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	519	first strand
Strand 2	A	525	529	anti-parallel
Strand 3	A	534	537	anti-parallel
Strand 4	A	543	547	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	563	first strand
Strand 2	A	569	573	anti-parallel
Strand 3	A	576	580	anti-parallel
Strand 4	A	589	591	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	607	first strand
Strand 2	A	613	616	anti-parallel
Strand 3	A	621	625	anti-parallel
Strand 4	A	630	634	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	684	689	anti-parallel
Strand 3	A	720	725	anti-parallel
Strand 4	A	756	759	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	713	first strand
Strand 2	A	785	791	parallel
Strand 3	A	765	775	anti-parallel
Strand 4	A	735	742	anti-parallel
Strand 5	A	745	751	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	352	355	anti-parallel
Strand 3	B	343	347	anti-parallel
Strand 4	B	332	337	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	43	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	56	60	anti-parallel
Strand 4	B	65	68	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	90	first strand
Strand 2	B	96	101	anti-parallel
Strand 3	B	106	110	anti-parallel
Strand 4	B	115	119	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	139	first strand
Strand 2	B	146	151	anti-parallel
Strand 3	B	156	160	anti-parallel
Strand 4	B	165	169	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	202	206	anti-parallel
Strand 4	B	212	215	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	235	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	249	253	anti-parallel
Strand 4	B	258	260	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	282	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	317	318	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	665	669	anti-parallel
Strand 3	B	658	662	anti-parallel
Strand 4	B	645	652	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	384	first strand
Strand 2	B	392	397	anti-parallel
Strand 3	B	402	406	anti-parallel
Strand 4	B	409	413	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	431	first strand
Strand 2	B	437	441	anti-parallel
Strand 3	B	446	450	anti-parallel
Strand 4	B	454	458	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	475	first strand
Strand 2	B	479	484	anti-parallel
Strand 3	B	488	492	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	519	first strand
Strand 2	B	525	529	anti-parallel
Strand 3	B	534	537	anti-parallel
Strand 4	B	543	547	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	563	first strand
Strand 2	B	569	573	anti-parallel
Strand 3	B	576	580	anti-parallel
Strand 4	B	589	591	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	607	first strand
Strand 2	B	613	617	anti-parallel
Strand 3	B	621	625	anti-parallel
Strand 4	B	630	634	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	689	first strand
Strand 2	B	720	725	anti-parallel
Strand 3	B	756	759	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	713	first strand
Strand 2	B	785	791	parallel
Strand 3	B	765	775	anti-parallel
Strand 4	B	735	742	anti-parallel
Strand 5	B	749	751	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	352	355	anti-parallel
Strand 3	C	343	347	anti-parallel
Strand 4	C	332	337	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	43	first strand
Strand 2	C	49	53	anti-parallel
Strand 3	C	56	60	anti-parallel
Strand 4	C	65	68	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	90	first strand
Strand 2	C	96	101	anti-parallel
Strand 3	C	106	110	anti-parallel
Strand 4	C	115	119	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	139	first strand
Strand 2	C	146	151	anti-parallel
Strand 3	C	156	160	anti-parallel
Strand 4	C	165	169	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	189	first strand
Strand 2	C	192	197	anti-parallel
Strand 3	C	202	206	anti-parallel
Strand 4	C	212	215	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	235	first strand
Strand 2	C	241	245	anti-parallel
Strand 3	C	248	252	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	282	first strand
Strand 2	C	287	292	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	316	318	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	665	669	anti-parallel
Strand 3	C	658	662	anti-parallel
Strand 4	C	645	652	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	384	first strand
Strand 2	C	393	397	anti-parallel
Strand 3	C	402	406	anti-parallel
Strand 4	C	409	414	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	431	first strand
Strand 2	C	437	441	anti-parallel
Strand 3	C	446	450	anti-parallel
Strand 4	C	454	458	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	474	first strand
Strand 2	C	479	484	anti-parallel
Strand 3	C	488	492	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	519	first strand
Strand 2	C	525	529	anti-parallel
Strand 3	C	534	537	anti-parallel
Strand 4	C	543	547	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	563	first strand
Strand 2	C	569	573	anti-parallel
Strand 3	C	576	580	anti-parallel
Strand 4	C	589	591	anti-parallel

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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	607	first strand
Strand 2	C	613	616	anti-parallel
Strand 3	C	621	625	anti-parallel
Strand 4	C	630	634	anti-parallel

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There are 3 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	684	689	first strand
Strand 2	C	720	725	anti-parallel
Strand 3	C	756	759	anti-parallel

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There are 5 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	713	first strand
Strand 2	C	785	791	parallel
Strand 3	C	765	775	anti-parallel
Strand 4	C	735	742	anti-parallel
Strand 5	C	749	751	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	352	355	anti-parallel
Strand 3	D	343	347	anti-parallel
Strand 4	D	332	337	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	43	first strand
Strand 2	D	49	53	anti-parallel
Strand 3	D	56	60	anti-parallel
Strand 4	D	65	68	anti-parallel

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There are 4 strands in AY sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	90	first strand
Strand 2	D	96	101	anti-parallel
Strand 3	D	106	110	anti-parallel
Strand 4	D	115	119	anti-parallel

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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	139	first strand
Strand 2	D	146	151	anti-parallel
Strand 3	D	156	160	anti-parallel
Strand 4	D	165	169	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	189	first strand
Strand 2	D	192	195	anti-parallel
Strand 3	D	202	206	anti-parallel
Strand 4	D	212	215	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	235	first strand
Strand 2	D	241	245	anti-parallel
Strand 3	D	248	253	anti-parallel
Strand 4	D	258	260	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	282	first strand
Strand 2	D	287	292	anti-parallel
Strand 3	D	297	301	anti-parallel
Strand 4	D	316	318	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	365	first strand
Strand 2	D	665	669	anti-parallel
Strand 3	D	658	662	anti-parallel
Strand 4	D	645	652	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	387	first strand
Strand 2	D	393	397	anti-parallel
Strand 3	D	402	406	anti-parallel
Strand 4	D	409	414	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	431	first strand
Strand 2	D	437	441	anti-parallel
Strand 3	D	446	449	anti-parallel
Strand 4	D	455	458	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	474	first strand
Strand 2	D	479	484	anti-parallel
Strand 3	D	487	492	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	519	first strand
Strand 2	D	525	529	anti-parallel
Strand 3	D	534	538	anti-parallel
Strand 4	D	542	547	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	558	563	first strand
Strand 2	D	569	573	anti-parallel
Strand 3	D	576	580	anti-parallel
Strand 4	D	589	591	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	604	607	first strand
Strand 2	D	613	616	anti-parallel
Strand 3	D	621	625	anti-parallel
Strand 4	D	630	634	anti-parallel

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There are 3 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	684	689	first strand
Strand 2	D	720	725	anti-parallel
Strand 3	D	756	759	anti-parallel

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There are 5 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	710	713	first strand
Strand 2	D	785	791	parallel
Strand 3	D	765	775	anti-parallel
Strand 4	D	735	742	anti-parallel
Strand 5	D	745	751	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9F