Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3V9H entry

There are 3 chains in PDB entry 3V9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 23	GLN 563
B	ARG 23	GLN 563
C	ARG 23	VAL 288

There are 84 helices in PDB entry 3V9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	58	Right-handed alpha
Helix 2	2	A	98	119	Right-handed alpha
Helix 3	3	A	120	137	Right-handed alpha
Helix 4	4	A	139	152	Right-handed alpha
Helix 5	5	A	154	163	Right-handed alpha
Helix 6	6	A	163	181	Right-handed alpha
Helix 7	7	A	212	226	Right-handed alpha
Helix 8	8	A	235	237	Right-handed 310
Helix 9	9	A	238	252	Right-handed alpha
Helix 10	10	A	265	276	Right-handed alpha
Helix 11	11	A	287	301	Right-handed alpha
Helix 12	12	A	302	305	Right-handed 310
Helix 13	13	A	328	342	Right-handed alpha
Helix 14	14	A	343	346	Right-handed 310
Helix 15	15	A	360	374	Right-handed alpha
Helix 16	16	A	393	410	Right-handed alpha
Helix 17	17	A	441	446	Right-handed alpha
Helix 18	18	A	459	461	Right-handed 310
Helix 19	19	A	462	474	Right-handed alpha
Helix 20	20	A	486	497	Right-handed alpha
Helix 21	21	A	536	540	Right-handed 310
Helix 22	22	A	559	563	Right-handed 310
Helix 23	23	B	44	58	Right-handed alpha
Helix 24	24	B	98	119	Right-handed alpha
Helix 25	25	B	120	137	Right-handed alpha
Helix 26	26	B	139	152	Right-handed alpha
Helix 27	27	B	154	163	Right-handed alpha
Helix 28	28	B	163	181	Right-handed alpha
Helix 29	29	B	212	226	Right-handed alpha
Helix 30	30	B	235	237	Right-handed 310
Helix 31	31	B	238	252	Right-handed alpha
Helix 32	32	B	265	276	Right-handed alpha
Helix 33	33	B	287	301	Right-handed alpha
Helix 34	34	B	302	305	Right-handed 310
Helix 35	35	B	328	342	Right-handed alpha
Helix 36	36	B	343	346	Right-handed 310
Helix 37	37	B	360	374	Right-handed alpha
Helix 38	38	B	393	410	Right-handed alpha
Helix 39	39	B	441	446	Right-handed alpha
Helix 40	40	B	459	461	Right-handed 310
Helix 41	41	B	462	474	Right-handed alpha
Helix 42	42	B	486	497	Right-handed alpha
Helix 43	43	B	536	540	Right-handed 310
Helix 44	44	B	559	563	Right-handed 310
Helix 45	45	C	44	56	Right-handed alpha
Helix 46	46	C	98	119	Right-handed alpha
Helix 47	47	C	120	137	Right-handed alpha
Helix 48	48	C	139	152	Right-handed alpha
Helix 49	49	C	154	162	Right-handed alpha
Helix 50	50	C	163	181	Right-handed alpha
Helix 51	51	C	212	226	Right-handed alpha
Helix 52	52	C	235	237	Right-handed 310
Helix 53	53	C	238	252	Right-handed alpha
Helix 54	54	C	265	276	Right-handed alpha
Helix 55	55	C	287	302	Right-handed alpha
Helix 56	56	C	328	342	Right-handed alpha
Helix 57	57	C	343	346	Right-handed 310
Helix 58	58	C	360	373	Right-handed alpha
Helix 59	59	C	393	410	Right-handed alpha
Helix 60	60	C	441	445	Right-handed 310
Helix 61	61	C	459	461	Right-handed 310
Helix 62	62	C	462	474	Right-handed alpha
Helix 63	63	C	486	497	Right-handed alpha
Helix 64	64	C	536	540	Right-handed 310
Helix 65	65	D	44	56	Right-handed alpha
Helix 66	66	D	98	119	Right-handed alpha
Helix 67	67	D	120	137	Right-handed alpha
Helix 68	68	D	139	152	Right-handed alpha
Helix 69	69	D	154	162	Right-handed alpha
Helix 70	70	D	163	181	Right-handed alpha
Helix 71	71	D	212	226	Right-handed alpha
Helix 72	72	D	235	237	Right-handed 310
Helix 73	73	D	238	252	Right-handed alpha
Helix 74	74	D	265	274	Right-handed alpha
Helix 75	75	D	287	301	Right-handed alpha
Helix 76	76	D	328	342	Right-handed alpha
Helix 77	77	D	343	346	Right-handed 310
Helix 78	78	D	360	372	Right-handed alpha
Helix 79	79	D	393	410	Right-handed alpha
Helix 80	80	D	441	446	Right-handed alpha
Helix 81	81	D	459	461	Right-handed 310
Helix 82	82	D	462	474	Right-handed alpha
Helix 83	83	D	486	497	Right-handed alpha
Helix 84	84	D	536	540	Right-handed 310

There are 27 sheets in PDB entry 3V9H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	30	first strand
Strand 2	C	24	30	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	86	95	parallel
Strand 3	A	78	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	71	73	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	199	first strand
Strand 2	A	542	550	anti-parallel
Strand 3	B	503	506	parallel
Strand 4	B	479	483	parallel
Strand 5	B	319	323	parallel
Strand 6	B	351	357	parallel
Strand 7	B	452	458	parallel
Strand 8	B	432	436	parallel
Strand 9	B	413	417	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	229	233	parallel
Strand 3	A	203	207	parallel
Strand 4	A	279	285	parallel
Strand 5	A	310	314	parallel

Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	417	first strand
Strand 2	A	432	436	anti-parallel
Strand 3	A	452	458	parallel
Strand 4	A	351	357	parallel
Strand 5	A	319	323	parallel
Strand 6	A	479	483	parallel
Strand 7	A	503	506	parallel
Strand 8	B	542	550	parallel
Strand 9	B	191	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	477	first strand
Strand 2	A	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	D	31	32	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	D	24	25	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	86	95	parallel
Strand 3	B	78	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	229	233	parallel
Strand 3	B	203	207	parallel
Strand 4	B	279	285	parallel
Strand 5	B	310	314	parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	477	first strand
Strand 2	B	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	86	95	parallel
Strand 3	C	78	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	71	73	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	199	first strand
Strand 2	C	542	550	anti-parallel
Strand 3	D	503	506	parallel
Strand 4	D	479	483	parallel
Strand 5	D	319	323	parallel
Strand 6	D	351	357	parallel
Strand 7	D	452	458	parallel
Strand 8	D	432	436	parallel
Strand 9	D	413	417	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	229	233	parallel
Strand 3	C	203	207	parallel
Strand 4	C	279	285	parallel
Strand 5	C	310	314	parallel

Back to list of sheets
Back to top of page

There are 9 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	432	435	anti-parallel
Strand 3	C	452	458	parallel
Strand 4	C	351	357	parallel
Strand 5	C	319	323	parallel
Strand 6	C	479	483	parallel
Strand 7	C	503	506	parallel
Strand 8	D	542	550	parallel
Strand 9	D	191	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	477	first strand
Strand 2	C	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	86	95	parallel
Strand 3	D	78	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	71	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	229	233	parallel
Strand 3	D	203	207	parallel
Strand 4	D	279	285	parallel
Strand 5	D	310	314	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	422	first strand
Strand 2	D	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	477	first strand
Strand 2	D	523	524	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3V9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9H