Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V9P entry

There are 2 chains in PDB entry 3V9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 206
B
 ALA 2LEU 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3V9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 33Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
48 61Right-handed alpha
Helix 4
4
A
64 83Right-handed alpha
Helix 5
5
A
83 90Right-handed alpha
Helix 6
6
A
99 108Right-handed alpha
Helix 7
7
A
114 127Right-handed alpha
Helix 8
8
A
143 147Right-handed 310
Helix 9
9
A
159 179Right-handed alpha
Helix 10
10
A
191 206Right-handed alpha
Helix 11
11
B
18 33Right-handed alpha
Helix 12
12
B
34 36Right-handed 310
Helix 13
13
B
48 61Right-handed alpha
Helix 14
14
B
64 83Right-handed alpha
Helix 15
15
B
83 90Right-handed alpha
Helix 16
16
B
99 108Right-handed alpha
Helix 17
17
B
114 127Right-handed alpha
Helix 18
18
B
143 147Right-handed 310
Helix 19
19
B
159 179Right-handed alpha
Helix 20
20
B
191 206Right-handed alpha
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There are 2 sheets in PDB entry 3V9P. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
93 97parallel
Strand 3
A
6 10parallel
Strand 4
A
133 138parallel
Strand 5
A
183 187parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
93 97parallel
Strand 3
B
6 10parallel
Strand 4
B
133 138parallel
Strand 5
B
183 187parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il