Analysis of interatomic Contacts of Structural Units in PDB entry:
3V9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3V9U entry

There are 8 chains in PDB entry 3V9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4LEU 209
B
 ASN 4SER 210
C
 GLN 6ALA 212
D
 ASN 4GLU 213
E
 A 6 T 7
F
 A 5 T 7
G
 A 5 T 7
H
 A 5 T 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3V9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 14Right-handed alpha
Helix 2
2
A
71 79Right-handed alpha
Helix 3
3
A
84 88Right-handed 310
Helix 4
4
A
91 109Right-handed alpha
Helix 5
5
A
122 137Right-handed alpha
Helix 6
6
A
151 160Right-handed alpha
Helix 7
7
A
163 171Right-handed alpha
Helix 8
8
A
182 204Right-handed alpha
Helix 9
9
B
5 14Right-handed alpha
Helix 10
10
B
71 79Right-handed alpha
Helix 11
11
B
91 108Right-handed alpha
Helix 12
12
B
122 136Right-handed alpha
Helix 13
13
B
151 160Right-handed alpha
Helix 14
14
B
163 172Right-handed alpha
Helix 15
15
B
182 204Right-handed alpha
Helix 16
16
C
9 14Right-handed alpha
Helix 17
17
C
71 79Right-handed alpha
Helix 18
18
C
84 88Right-handed 310
Helix 19
19
C
91 111Right-handed alpha
Helix 20
20
C
122 136Right-handed alpha
Helix 21
21
C
151 160Right-handed alpha
Helix 22
22
C
163 171Right-handed alpha
Helix 23
23
C
182 204Right-handed alpha
Helix 24
24
D
9 14Right-handed alpha
Helix 25
25
D
71 79Right-handed alpha
Helix 26
26
D
91 111Right-handed alpha
Helix 27
27
D
122 137Right-handed alpha
Helix 28
28
D
151 160Right-handed alpha
Helix 29
29
D
163 171Right-handed alpha
Helix 30
30
D
182 204Right-handed alpha
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There are 4 sheets in PDB entry 3V9U. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 61first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
17 26anti-parallel
Strand 4
A
114 119parallel
Strand 5
A
143 150parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 61first strand
Strand 2
B
36 46anti-parallel
Strand 3
B
17 26anti-parallel
Strand 4
B
114 119parallel
Strand 5
B
143 150parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 61first strand
Strand 2
C
36 46anti-parallel
Strand 3
C
17 26anti-parallel
Strand 4
C
114 119parallel
Strand 5
C
143 150parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 61first strand
Strand 2
D
36 46anti-parallel
Strand 3
D
17 26anti-parallel
Strand 4
D
114 119parallel
Strand 5
D
143 150parallel
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