Analysis of interatomic Contacts of Structural Units in PDB entry:
3VA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VA0 entry

There are 4 chains in PDB entry 3VA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLU 214
B
 THR 8VAL 215
C
 G 1 G 2
D
 G 1 G 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3VA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
71 79Right-handed alpha
Helix 3
3
A
91 111Right-handed alpha
Helix 4
4
A
122 136Right-handed alpha
Helix 5
5
A
151 160Right-handed alpha
Helix 6
6
A
163 171Right-handed alpha
Helix 7
7
A
176 180Right-handed 310
Helix 8
8
A
182 204Right-handed alpha
Helix 9
9
A
210 214Right-handed 310
Helix 10
10
B
9 14Right-handed alpha
Helix 11
11
B
71 79Right-handed alpha
Helix 12
12
B
91 111Right-handed alpha
Helix 13
13
B
122 136Right-handed alpha
Helix 14
14
B
151 159Right-handed alpha
Helix 15
15
B
163 171Right-handed alpha
Helix 16
16
B
176 180Right-handed 310
Helix 17
17
B
182 204Right-handed alpha
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There are 2 sheets in PDB entry 3VA0. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
52 62parallel
Strand 3
A
36 46anti-parallel
Strand 4
A
17 26anti-parallel
Strand 5
A
114 119parallel
Strand 6
A
143 150parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
52 62parallel
Strand 3
B
36 46anti-parallel
Strand 4
B
17 26anti-parallel
Strand 5
B
114 119parallel
Strand 6
B
143 150parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il