Analysis of interatomic Contacts of Structural Units in PDB entry:
3VA7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VA7 entry

There is 1 chain in PDB entry 3VA7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 621VAL 1829
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3VA7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
632 647Right-handed alpha
Helix 2
2
A
656 660Right-handed 310
Helix 3
3
A
661 667Right-handed alpha
Helix 4
4
A
684 695Right-handed alpha
Helix 5
5
A
705 709Right-handed 310
Helix 6
6
A
710 719Right-handed alpha
Helix 7
7
A
728 737Right-handed alpha
Helix 8
8
A
739 748Right-handed alpha
Helix 9
9
A
869 887Right-handed alpha
Helix 10
10
A
918 927Right-handed alpha
Helix 11
11
A
929 939Right-handed alpha
Helix 12
12
A
944 948Right-handed 310
Helix 13
13
A
1015 1029Right-handed alpha
Helix 14
14
A
1038 1048Right-handed alpha
Helix 15
15
A
1048 1054Right-handed alpha
Helix 16
16
A
1059 1064Right-handed 310
Helix 17
17
A
1103 1114Right-handed alpha
Helix 18
18
A
1201 1205Right-handed 310
Helix 19
19
A
1243 1247Right-handed 310
Helix 20
20
A
1272 1282Right-handed alpha
Helix 21
21
A
1309 1313Right-handed 310
Helix 22
22
A
1359 1364Right-handed alpha
Helix 23
23
A
1378 1396Right-handed alpha
Helix 24
24
A
1405 1409Right-handed 310
Helix 25
25
A
1451 1469Right-handed alpha
Helix 26
26
A
1493 1506Right-handed alpha
Helix 27
27
A
1529 1543Right-handed alpha
Helix 28
28
A
1552 1561Right-handed alpha
Helix 29
29
A
1564 1573Right-handed alpha
Helix 30
30
A
1596 1600Right-handed 310
Helix 31
31
A
1675 1688Right-handed alpha
Helix 32
32
A
1702 1711Right-handed alpha
Helix 33
33
A
1712 1722Right-handed alpha
Helix 34
34
A
1725 1736Right-handed alpha
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There are 13 sheets in PDB entry 3VA7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 672first strand
Strand 2
A
649 654parallel
Strand 3
A
626 629parallel
Strand 4
A
699 701parallel
Strand 5
A
723 724parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 912first strand
Strand 2
A
890 900anti-parallel
Strand 3
A
828 837anti-parallel
Strand 4
A
842 854anti-parallel
Strand 5
A
857 863anti-parallel
Strand 6
A
955 962anti-parallel
Strand 7
A
1005 1013anti-parallel
Strand 8
A
987 990anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 965first strand
Strand 2
A
971 972anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
975 976first strand
Strand 2
A
997 998anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
979 981first strand
Strand 2
A
1031 1033anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1081 1083first strand
Strand 2
A
1122 1126anti-parallel
Strand 3
A
1169 1185anti-parallel
Strand 4
A
1138 1151anti-parallel
Strand 5
A
1162 1164anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1154 1155first strand
Strand 2
A
1138 1151anti-parallel
Strand 3
A
1169 1185anti-parallel
Strand 4
A
1131 1134anti-parallel
Strand 5
A
1070 1075anti-parallel
Strand 6
A
1219 1221anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1255 1262first strand
Strand 2
A
1351 1355anti-parallel
Strand 3
A
1328 1332anti-parallel
Strand 4
A
1335 1339anti-parallel
Strand 5
A
1294 1298anti-parallel
Strand 6
A
1284 1291anti-parallel
Strand 7
A
1371 1376anti-parallel
Strand 8
A
1255 1262parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1318 1323first strand
Strand 2
A
1346 1349anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1417 1421first strand
Strand 2
A
1431 1435anti-parallel
Strand 3
A
1440 1445anti-parallel
Strand 4
A
1482 1487anti-parallel
Strand 5
A
1473 1478anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1694 1701first strand
Strand 2
A
1515 1527anti-parallel
Strand 3
A
1668 1674parallel
Strand 4
A
1577 1582anti-parallel
Strand 5
A
1590 1594anti-parallel
Strand 6
A
1624 1627anti-parallel
Strand 7
A
1617 1621anti-parallel
Strand 8
A
1638 1642anti-parallel
Strand 9
A
1515 1527anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1761 1764first strand
Strand 2
A
1824 1829anti-parallel
Strand 3
A
1806 1811anti-parallel
Strand 4
A
1781 1782anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1796 1801first strand
Strand 2
A
1787 1793anti-parallel
Strand 3
A
1769 1774anti-parallel
Strand 4
A
1818 1819anti-parallel
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