Analysis of interatomic Contacts of Structural Units in PDB entry:
3VA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VA8 entry

There is 1 chain in PDB entry 3VA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5TRP 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3VA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 5Right-handed alpha
Helix 2
2
A
54 69Right-handed alpha
Helix 3
3
A
75 87Right-handed alpha
Helix 4
4
A
106 128Right-handed alpha
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
169 185Right-handed alpha
Helix 7
7
A
197 212Right-handed alpha
Helix 8
8
A
226 237Right-handed alpha
Helix 9
9
A
249 259Right-handed alpha
Helix 10
10
A
273 275Right-handed 310
Helix 11
11
A
276 283Right-handed alpha
Helix 12
12
A
292 297Right-handed alpha
Helix 13
13
A
298 313Right-handed alpha
Helix 14
14
A
324 337Right-handed alpha
Helix 15
15
A
348 352Right-handed 310
Helix 16
16
A
384 399Right-handed alpha
Helix 17
17
A
404 411Right-handed alpha
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There are 4 sheets in PDB entry 3VA8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 18first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
46 52anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
27 28anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
370 372anti-parallel
Strand 3
A
366 367anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
189 192parallel
Strand 3
A
217 220parallel
Strand 4
A
243 245parallel
Strand 5
A
265 267parallel
Strand 6
A
288 291parallel
Strand 7
A
315 318parallel
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