Analysis of interatomic Contacts of Structural Units in PDB entry:
3VAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VAR entry

There is 1 chain in PDB entry 3VAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28ASP 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3VAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 48Right-handed alpha
Helix 2
2
A
51 66Right-handed alpha
Helix 3
3
A
146 151Right-handed 310
Helix 4
4
A
204 209Right-handed 310
Helix 5
5
A
215 222Right-handed alpha
Helix 6
6
A
240 250Right-handed alpha
Helix 7
7
A
252 256Right-handed 310
Helix 8
8
A
283 301Right-handed alpha
Helix 9
9
A
304 310Right-handed alpha
Helix 10
10
A
321 325Right-handed 310
Helix 11
11
A
335 346Right-handed alpha
Helix 12
12
A
352 358Right-handed alpha
Helix 13
13
A
359 361Right-handed 310
Helix 14
14
A
405 420Right-handed alpha
Helix 15
15
A
437 447Right-handed alpha
Helix 16
16
A
469 492Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3VAR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
84 89parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
313 319anti-parallel
Strand 5
A
109 115parallel
Strand 6
A
362 366parallel
Strand 7
A
450 454parallel
Strand 8
A
393 394anti-parallel
Strand 9
A
424 425parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
139 142anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
134 136anti-parallel
Strand 3
A
211 214anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
155 162anti-parallel
Strand 3
A
258 265anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
465 468anti-parallel
Strand 4
A
456 458anti-parallel
Strand 5
A
369 370parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il