Analysis of interatomic Contacts of Structural Units in PDB entry:
3VAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VAV entry

There are 6 chains in PDB entry 3VAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 9	PHE 271
B	ARG 9	PHE 271
C	ARG 9	PHE 271
D	ARG 9	PHE 271
E	ARG 9	PHE 271
F	ARG 9	THR 63

There are131 helices in PDB entry 3VAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	24	Right-handed alpha
Helix 2	2	A	34	44	Right-handed alpha
Helix 3	3	A	54	59	Right-handed alpha
Helix 4	4	A	69	83	Right-handed alpha
Helix 5	5	A	100	114	Right-handed alpha
Helix 6	6	A	124	126	Right-handed 310
Helix 7	7	A	127	137	Right-handed alpha
Helix 8	8	A	148	150	Right-handed 310
Helix 9	9	A	151	156	Right-handed alpha
Helix 10	10	A	164	182	Right-handed alpha
Helix 11	11	A	192	203	Right-handed alpha
Helix 12	12	A	222	227	Right-handed alpha
Helix 13	13	A	247	261	Right-handed alpha
Helix 14	14	A	266	270	Right-handed 310
Helix 15	15	B	13	24	Right-handed alpha
Helix 16	16	B	34	44	Right-handed alpha
Helix 17	17	B	54	59	Right-handed alpha
Helix 18	18	B	69	83	Right-handed alpha
Helix 19	19	B	100	114	Right-handed alpha
Helix 20	20	B	124	126	Right-handed 310
Helix 21	21	B	127	137	Right-handed alpha
Helix 22	22	B	148	150	Right-handed 310
Helix 23	23	B	151	156	Right-handed alpha
Helix 24	24	B	164	181	Right-handed alpha
Helix 25	25	B	192	203	Right-handed alpha
Helix 26	26	B	222	227	Right-handed alpha
Helix 27	27	B	247	261	Right-handed alpha
Helix 28	28	B	266	270	Right-handed 310
Helix 29	29	C	13	23	Right-handed alpha
Helix 30	30	C	34	44	Right-handed alpha
Helix 31	31	C	54	59	Right-handed alpha
Helix 32	32	C	69	83	Right-handed alpha
Helix 33	33	C	100	114	Right-handed alpha
Helix 34	34	C	124	126	Right-handed 310
Helix 35	35	C	127	137	Right-handed alpha
Helix 36	36	C	168	182	Right-handed alpha
Helix 37	37	C	192	203	Right-handed alpha
Helix 38	38	C	222	227	Right-handed alpha
Helix 39	39	C	247	261	Right-handed alpha
Helix 40	40	C	266	270	Right-handed 310
Helix 41	41	D	13	24	Right-handed alpha
Helix 42	42	D	34	44	Right-handed alpha
Helix 43	43	D	54	59	Right-handed alpha
Helix 44	44	D	69	83	Right-handed alpha
Helix 45	45	D	100	114	Right-handed alpha
Helix 46	46	D	124	126	Right-handed 310
Helix 47	47	D	127	137	Right-handed alpha
Helix 48	48	D	148	152	Right-handed 310
Helix 49	49	D	164	182	Right-handed alpha
Helix 50	50	D	192	203	Right-handed alpha
Helix 51	51	D	222	227	Right-handed alpha
Helix 52	52	D	247	261	Right-handed alpha
Helix 53	53	D	266	270	Right-handed 310
Helix 54	54	E	13	24	Right-handed alpha
Helix 55	55	E	34	44	Right-handed alpha
Helix 56	56	E	54	59	Right-handed alpha
Helix 57	57	E	69	83	Right-handed alpha
Helix 58	58	E	100	114	Right-handed alpha
Helix 59	59	E	124	126	Right-handed 310
Helix 60	60	E	127	137	Right-handed alpha
Helix 61	61	E	165	182	Right-handed alpha
Helix 62	62	E	192	203	Right-handed alpha
Helix 63	63	E	222	227	Right-handed alpha
Helix 64	64	E	247	261	Right-handed alpha
Helix 65	65	E	266	270	Right-handed 310
Helix 66	66	F	13	24	Right-handed alpha
Helix 67	67	F	34	44	Right-handed alpha
Helix 68	68	F	54	59	Right-handed alpha
Helix 69	69	F	69	83	Right-handed alpha
Helix 70	70	F	100	114	Right-handed alpha
Helix 71	71	F	124	126	Right-handed 310
Helix 72	72	F	127	137	Right-handed alpha
Helix 73	73	F	148	150	Right-handed 310
Helix 74	74	F	151	156	Right-handed alpha
Helix 75	75	F	165	182	Right-handed alpha
Helix 76	76	F	192	203	Right-handed alpha
Helix 77	77	F	222	227	Right-handed alpha
Helix 78	78	F	247	261	Right-handed alpha
Helix 79	79	F	266	270	Right-handed 310
Helix 80	80	G	13	24	Right-handed alpha
Helix 81	81	G	34	44	Right-handed alpha
Helix 82	82	G	54	59	Right-handed alpha
Helix 83	83	G	69	83	Right-handed alpha
Helix 84	84	G	100	114	Right-handed alpha
Helix 85	85	G	124	126	Right-handed 310
Helix 86	86	G	127	137	Right-handed alpha
Helix 87	87	G	168	181	Right-handed alpha
Helix 88	88	G	192	203	Right-handed alpha
Helix 89	89	G	222	227	Right-handed alpha
Helix 90	90	G	247	261	Right-handed alpha
Helix 91	91	G	266	270	Right-handed 310
Helix 92	92	H	13	24	Right-handed alpha
Helix 93	93	H	34	44	Right-handed alpha
Helix 94	94	H	54	59	Right-handed alpha
Helix 95	95	H	69	83	Right-handed alpha
Helix 96	96	H	100	114	Right-handed alpha
Helix 97	97	H	124	126	Right-handed 310
Helix 98	98	H	127	137	Right-handed alpha
Helix 99	99	H	148	150	Right-handed 310
Helix 100	100	H	151	156	Right-handed alpha
Helix 101	101	H	164	182	Right-handed alpha
Helix 102	102	H	192	203	Right-handed alpha
Helix 103	103	H	222	227	Right-handed alpha
Helix 104	104	H	247	261	Right-handed alpha
Helix 105	105	H	266	270	Right-handed 310
Helix 106	106	I	13	24	Right-handed alpha
Helix 107	107	I	34	44	Right-handed alpha
Helix 108	108	I	54	59	Right-handed alpha
Helix 109	109	I	69	83	Right-handed alpha
Helix 110	110	I	100	114	Right-handed alpha
Helix 111	111	I	124	126	Right-handed 310
Helix 112	112	I	127	137	Right-handed alpha
Helix 113	113	I	166	182	Right-handed alpha
Helix 114	114	I	192	203	Right-handed alpha
Helix 115	115	I	222	227	Right-handed alpha
Helix 116	116	I	247	261	Right-handed alpha
Helix 117	117	I	266	270	Right-handed 310
Helix 118	118	J	13	24	Right-handed alpha
Helix 119	119	J	34	44	Right-handed alpha
Helix 120	120	J	54	59	Right-handed alpha
Helix 121	121	J	69	83	Right-handed alpha
Helix 122	122	J	100	114	Right-handed alpha
Helix 123	123	J	124	126	Right-handed 310
Helix 124	124	J	127	137	Right-handed alpha
Helix 125	125	J	148	150	Right-handed 310
Helix 126	126	J	151	156	Right-handed alpha
Helix 127	127	J	164	181	Right-handed alpha
Helix 128	128	J	192	203	Right-handed alpha
Helix 129	129	J	222	227	Right-handed alpha
Helix 130	130	J	247	261	Right-handed alpha
Helix 131	131	J	266	270	Right-handed 310

There are 10 sheets in PDB entry 3VAV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	48	51	parallel
Strand 3	A	88	92	parallel
Strand 4	A	118	122	parallel
Strand 5	A	141	146	parallel
Strand 6	A	185	189	parallel
Strand 7	A	207	210	parallel
Strand 8	A	218	221	parallel
Strand 9	A	27	31	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	48	51	parallel
Strand 3	B	88	92	parallel
Strand 4	B	118	122	parallel
Strand 5	B	141	146	parallel
Strand 6	B	185	189	parallel
Strand 7	B	207	210	parallel
Strand 8	B	218	221	parallel
Strand 9	B	27	31	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	48	51	parallel
Strand 3	C	88	92	parallel
Strand 4	C	118	120	parallel
Strand 5	C	141	145	parallel
Strand 6	C	185	189	parallel
Strand 7	C	207	210	parallel
Strand 8	C	218	221	parallel
Strand 9	C	27	31	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	48	51	parallel
Strand 3	D	88	92	parallel
Strand 4	D	118	120	parallel
Strand 5	D	141	146	parallel
Strand 6	D	185	189	parallel
Strand 7	D	207	210	parallel
Strand 8	D	218	221	parallel
Strand 9	D	27	31	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	31	first strand
Strand 2	E	48	51	parallel
Strand 3	E	88	92	parallel
Strand 4	E	118	122	parallel
Strand 5	E	141	146	parallel
Strand 6	E	185	189	parallel
Strand 7	E	207	210	parallel
Strand 8	E	218	221	parallel
Strand 9	E	27	31	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	31	first strand
Strand 2	F	48	51	parallel
Strand 3	F	88	92	parallel
Strand 4	F	118	122	parallel
Strand 5	F	141	146	parallel
Strand 6	F	185	189	parallel
Strand 7	F	207	210	parallel
Strand 8	F	218	221	parallel
Strand 9	F	27	31	parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	31	first strand
Strand 2	G	48	51	parallel
Strand 3	G	88	92	parallel
Strand 4	G	118	122	parallel
Strand 5	G	141	145	parallel
Strand 6	G	185	189	parallel
Strand 7	G	207	210	parallel
Strand 8	G	218	221	parallel
Strand 9	G	27	31	parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	31	first strand
Strand 2	H	48	51	parallel
Strand 3	H	88	92	parallel
Strand 4	H	118	122	parallel
Strand 5	H	141	146	parallel
Strand 6	H	185	189	parallel
Strand 7	H	207	210	parallel
Strand 8	H	218	221	parallel
Strand 9	H	27	31	parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	31	first strand
Strand 2	I	48	51	parallel
Strand 3	I	88	92	parallel
Strand 4	I	118	122	parallel
Strand 5	I	141	145	parallel
Strand 6	I	185	189	parallel
Strand 7	I	207	210	parallel
Strand 8	I	218	221	parallel
Strand 9	I	27	31	parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	31	first strand
Strand 2	J	48	51	parallel
Strand 3	J	88	92	parallel
Strand 4	J	118	122	parallel
Strand 5	J	141	146	parallel
Strand 6	J	185	189	parallel
Strand 7	J	207	210	parallel
Strand 8	J	218	221	parallel
Strand 9	J	27	31	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VAV