Analysis of interatomic Contacts of Structural Units in PDB entry:
3VAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VAX entry

There are 2 chains in PDB entry 3VAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLY 359
B
 THR 2GLY 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3VAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 29Right-handed alpha
Helix 2
2
A
33 56Right-handed alpha
Helix 3
3
A
59 61Right-handed 310
Helix 4
4
A
68 79Right-handed alpha
Helix 5
5
A
80 88Right-handed alpha
Helix 6
6
A
99 111Right-handed alpha
Helix 7
7
A
128 134Right-handed alpha
Helix 8
8
A
157 166Right-handed alpha
Helix 9
9
A
183 189Right-handed 310
Helix 10
10
A
199 202Right-handed 310
Helix 11
11
A
234 238Right-handed 310
Helix 12
12
A
244 261Right-handed alpha
Helix 13
13
A
261 281Right-handed alpha
Helix 14
14
A
307 322Right-handed alpha
Helix 15
15
A
334 340Right-handed alpha
Helix 16
16
A
344 349Right-handed alpha
Helix 17
17
B
13 29Right-handed alpha
Helix 18
18
B
33 56Right-handed alpha
Helix 19
19
B
59 61Right-handed 310
Helix 20
20
B
68 79Right-handed alpha
Helix 21
21
B
80 88Right-handed alpha
Helix 22
22
B
99 111Right-handed alpha
Helix 23
23
B
128 136Right-handed alpha
Helix 24
24
B
157 166Right-handed alpha
Helix 25
25
B
183 187Right-handed 310
Helix 26
26
B
199 202Right-handed 310
Helix 27
27
B
234 238Right-handed 310
Helix 28
28
B
244 261Right-handed alpha
Helix 29
29
B
261 281Right-handed alpha
Helix 30
30
B
307 323Right-handed alpha
Helix 31
31
B
334 340Right-handed alpha
Helix 32
32
B
344 349Right-handed alpha
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There are 4 sheets in PDB entry 3VAX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
171 175parallel
Strand 5
A
140 144parallel
Strand 6
A
91 95parallel
Strand 7
A
115 119parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
351 358anti-parallel
Strand 4
A
326 332anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
208 212anti-parallel
Strand 3
B
193 197anti-parallel
Strand 4
B
171 175parallel
Strand 5
B
140 144parallel
Strand 6
B
91 95parallel
Strand 7
B
115 119parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 287first strand
Strand 2
B
298 302anti-parallel
Strand 3
B
351 358anti-parallel
Strand 4
B
326 332anti-parallel
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