Analysis of interatomic Contacts of Structural Units in PDB entry:
3VAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VAY entry

There are 2 chains in PDB entry 3VAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 230
B
 MET 1ALA 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3VAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 35Right-handed alpha
Helix 2
2
A
42 57Right-handed alpha
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
82 102Right-handed alpha
Helix 6
6
A
109 119Right-handed alpha
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
138 142Right-handed 310
Helix 9
9
A
148 152Right-handed alpha
Helix 10
10
A
157 169Right-handed alpha
Helix 11
11
A
171 173Right-handed 310
Helix 12
12
A
185 192Right-handed alpha
Helix 13
13
A
218 220Right-handed 310
Helix 14
14
A
221 228Right-handed alpha
Helix 15
15
B
16 35Right-handed alpha
Helix 16
16
B
42 57Right-handed alpha
Helix 17
17
B
58 62Right-handed 310
Helix 18
18
B
63 78Right-handed alpha
Helix 19
19
B
82 102Right-handed alpha
Helix 20
20
B
109 119Right-handed alpha
Helix 21
21
B
138 142Right-handed 310
Helix 22
22
B
148 152Right-handed alpha
Helix 23
23
B
157 169Right-handed alpha
Helix 24
24
B
171 173Right-handed 310
Helix 25
25
B
185 192Right-handed alpha
Helix 26
26
B
218 220Right-handed 310
Helix 27
27
B
221 228Right-handed alpha
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There are 2 sheets in PDB entry 3VAY. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
122 127parallel
Strand 3
A
4 7parallel
Strand 4
A
175 179parallel
Strand 5
A
195 199parallel
Strand 6
A
214 216parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
122 127parallel
Strand 3
B
4 7parallel
Strand 4
B
175 179parallel
Strand 5
B
195 199parallel
Strand 6
B
214 216parallel
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