Analysis of interatomic Contacts of Structural Units in PDB entry:
3VAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VAZ entry

There are 6 chains in PDB entry 3VAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 MET 1LYS 336
R
 ALA 2SER 335
O
 ALA 2SER 335
Q
 ALA 2LEU 334
B
 ALA 2SER 335
A
 ALA 2SER 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 3VAZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
P
11 22Right-handed alpha
Helix 2
2
P
37 47Right-handed alpha
Helix 3
3
P
79 83Right-handed 310
Helix 4
4
P
84 89Right-handed alpha
Helix 5
5
P
106 113Right-handed alpha
Helix 6
6
P
135 139Right-handed 310
Helix 7
7
P
150 168Right-handed alpha
Helix 8
8
P
216 220Right-handed 310
Helix 9
9
P
221 225Right-handed 310
Helix 10
10
P
255 266Right-handed alpha
Helix 11
11
P
279 284Right-handed 310
Helix 12
12
P
295 297Right-handed 310
Helix 13
13
P
317 334Right-handed alpha
Helix 14
14
R
11 23Right-handed alpha
Helix 15
15
R
37 47Right-handed alpha
Helix 16
16
R
106 111Right-handed alpha
Helix 17
17
R
135 139Right-handed 310
Helix 18
18
R
150 167Right-handed alpha
Helix 19
19
R
216 220Right-handed 310
Helix 20
20
R
221 225Right-handed 310
Helix 21
21
R
255 266Right-handed alpha
Helix 22
22
R
279 284Right-handed alpha
Helix 23
23
R
295 297Right-handed 310
Helix 24
24
R
317 334Right-handed alpha
Helix 25
25
O
11 22Right-handed alpha
Helix 26
26
O
37 47Right-handed alpha
Helix 27
27
O
79 83Right-handed 310
Helix 28
28
O
102 113Right-handed alpha
Helix 29
29
O
135 139Right-handed 310
Helix 30
30
O
150 168Right-handed alpha
Helix 31
31
O
201 205Right-handed 310
Helix 32
32
O
216 220Right-handed 310
Helix 33
33
O
221 225Right-handed 310
Helix 34
34
O
255 266Right-handed alpha
Helix 35
35
O
279 284Right-handed 310
Helix 36
36
O
317 334Right-handed alpha
Helix 37
37
Q
11 22Right-handed alpha
Helix 38
38
Q
37 47Right-handed alpha
Helix 39
39
Q
106 112Right-handed alpha
Helix 40
40
Q
135 139Right-handed 310
Helix 41
41
Q
150 168Right-handed alpha
Helix 42
42
Q
201 205Right-handed 310
Helix 43
43
Q
216 220Right-handed 310
Helix 44
44
Q
221 225Right-handed 310
Helix 45
45
Q
255 266Right-handed alpha
Helix 46
46
Q
279 284Right-handed 310
Helix 47
47
Q
317 333Right-handed alpha
Helix 48
48
B
11 22Right-handed alpha
Helix 49
49
B
37 47Right-handed alpha
Helix 50
50
B
79 83Right-handed 310
Helix 51
51
B
102 113Right-handed alpha
Helix 52
52
B
135 139Right-handed 310
Helix 53
53
B
150 168Right-handed alpha
Helix 54
54
B
201 205Right-handed 310
Helix 55
55
B
214 220Right-handed 310
Helix 56
56
B
221 225Right-handed 310
Helix 57
57
B
255 265Right-handed alpha
Helix 58
58
B
279 284Right-handed 310
Helix 59
59
B
295 297Right-handed 310
Helix 60
60
B
317 334Right-handed alpha
Helix 61
61
A
11 23Right-handed alpha
Helix 62
62
A
37 47Right-handed alpha
Helix 63
63
A
79 83Right-handed 310
Helix 64
64
A
102 113Right-handed alpha
Helix 65
65
A
135 139Right-handed 310
Helix 66
66
A
150 167Right-handed alpha
Helix 67
67
A
201 205Right-handed 310
Helix 68
68
A
216 220Right-handed 310
Helix 69
69
A
221 225Right-handed 310
Helix 70
70
A
255 266Right-handed alpha
Helix 71
71
A
279 284Right-handed 310
Helix 72
72
A
295 297Right-handed 310
Helix 73
73
A
317 334Right-handed alpha
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There are 16 sheets in PDB entry 3VAZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
58 60first strand
Strand 2
P
65 67anti-parallel
Strand 3
P
70 75anti-parallel
Strand 4
P
27 33parallel
Strand 5
P
3 8parallel
Strand 6
P
92 95parallel
Strand 7
P
116 119parallel
Strand 8
P
145 147parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
207 209first strand
Strand 2
P
232 235anti-parallel
Strand 3
P
169 179parallel
Strand 4
P
241 249anti-parallel
Strand 5
P
306 314anti-parallel
Strand 6
P
290 293anti-parallel
Strand 7
P
271 274parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
228 229first strand
Strand 2
P
169 179parallel
Strand 3
P
241 249anti-parallel
Strand 4
P
306 314anti-parallel
Strand 5
P
298 301anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
58 60first strand
Strand 2
R
64 67anti-parallel
Strand 3
R
70 75anti-parallel
Strand 4
R
27 33parallel
Strand 5
R
3 8parallel
Strand 6
R
92 95parallel
Strand 7
R
116 119parallel
Strand 8
R
145 147parallel
Strand 9
R
128 129parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
207 209first strand
Strand 2
R
228 235anti-parallel
Strand 3
R
169 179parallel
Strand 4
R
241 249anti-parallel
Strand 5
R
305 314anti-parallel
Strand 6
R
290 293anti-parallel
Strand 7
R
271 274parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
207 209first strand
Strand 2
R
228 235anti-parallel
Strand 3
R
169 179parallel
Strand 4
R
241 249anti-parallel
Strand 5
R
305 314anti-parallel
Strand 6
R
298 302anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
58 61first strand
Strand 2
O
64 67anti-parallel
Strand 3
O
70 75anti-parallel
Strand 4
O
27 33parallel
Strand 5
O
3 8parallel
Strand 6
O
92 95parallel
Strand 7
O
116 119parallel
Strand 8
O
145 147parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
207 210first strand
Strand 2
O
228 235anti-parallel
Strand 3
O
169 179parallel
Strand 4
O
241 249anti-parallel
Strand 5
O
305 314anti-parallel
Strand 6
O
290 302anti-parallel
Strand 7
O
271 274parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
58 61first strand
Strand 2
Q
64 67anti-parallel
Strand 3
Q
70 75anti-parallel
Strand 4
Q
27 33parallel
Strand 5
Q
3 8parallel
Strand 6
Q
92 95parallel
Strand 7
Q
116 119parallel
Strand 8
Q
145 147parallel
Strand 9
Q
128 129parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
207 209first strand
Strand 2
Q
228 235anti-parallel
Strand 3
Q
169 179parallel
Strand 4
Q
241 249anti-parallel
Strand 5
Q
305 314anti-parallel
Strand 6
Q
290 302anti-parallel
Strand 7
Q
271 274parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
28 33parallel
Strand 5
B
4 8parallel
Strand 6
B
92 95parallel
Strand 7
B
116 119parallel
Strand 8
B
145 147parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
228 235anti-parallel
Strand 3
B
169 179parallel
Strand 4
B
241 249anti-parallel
Strand 5
B
305 314anti-parallel
Strand 6
B
290 293anti-parallel
Strand 7
B
271 274parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
228 235anti-parallel
Strand 3
B
169 179parallel
Strand 4
B
241 249anti-parallel
Strand 5
B
305 314anti-parallel
Strand 6
B
298 302anti-parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
27 33parallel
Strand 5
A
3 8parallel
Strand 6
A
92 95parallel
Strand 7
A
116 119parallel
Strand 8
A
145 147parallel
Strand 9
A
128 129parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
169 179parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
305 314anti-parallel
Strand 6
A
290 293anti-parallel
Strand 7
A
271 274parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
169 179parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
305 314anti-parallel
Strand 6
A
298 302anti-parallel
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