Analysis of interatomic Contacts of Structural Units in PDB entry:
3VB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VB0 entry

There are 4 chains in PDB entry 3VB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLN 290
B	SER 2	GLN 290
C	SER 2	GLN 290
D	SER 2	GLN 290

There are 31 helices in PDB entry 3VB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	28	Right-handed alpha
Helix 2	2	A	70	72	Right-handed 310
Helix 3	3	A	73	84	Right-handed alpha
Helix 4	4	A	92	99	Right-handed alpha
Helix 5	5	A	126	131	Right-handed alpha
Helix 6	6	A	154	165	Right-handed alpha
Helix 7	7	A	216	230	Right-handed alpha
Helix 8	8	A	270	274	Right-handed 310
Helix 9	9	B	14	28	Right-handed alpha
Helix 10	10	B	70	72	Right-handed 310
Helix 11	11	B	73	84	Right-handed alpha
Helix 12	12	B	92	99	Right-handed alpha
Helix 13	13	B	126	131	Right-handed alpha
Helix 14	14	B	154	165	Right-handed alpha
Helix 15	15	B	216	230	Right-handed alpha
Helix 16	16	B	270	274	Right-handed 310
Helix 17	17	C	14	28	Right-handed alpha
Helix 18	18	C	70	72	Right-handed 310
Helix 19	19	C	73	84	Right-handed alpha
Helix 20	20	C	92	99	Right-handed alpha
Helix 21	21	C	126	131	Right-handed alpha
Helix 22	22	C	154	165	Right-handed alpha
Helix 23	23	C	216	230	Right-handed alpha
Helix 24	24	C	270	274	Right-handed 310
Helix 25	25	D	14	28	Right-handed alpha
Helix 26	26	D	70	84	Right-handed alpha
Helix 27	27	D	92	99	Right-handed alpha
Helix 28	28	D	126	131	Right-handed alpha
Helix 29	29	D	154	165	Right-handed alpha
Helix 30	30	D	216	230	Right-handed alpha
Helix 31	31	D	270	274	Right-handed 310

There are 12 sheets in PDB entry 3VB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	41	44	anti-parallel
Strand 3	A	52	56	anti-parallel
Strand 4	A	5	13	parallel
Strand 5	A	61	68	anti-parallel
Strand 6	A	114	120	parallel
Strand 7	A	101	108	anti-parallel
Strand 8	A	89	90	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	141	142	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	169	176	parallel
Strand 3	A	179	185	anti-parallel
Strand 4	A	193	196	anti-parallel
Strand 5	A	147	151	parallel
Strand 6	A	207	213	anti-parallel
Strand 7	A	258	263	parallel
Strand 8	A	247	252	anti-parallel
Strand 9	A	236	241	anti-parallel
Strand 10	A	283	286	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	41	44	anti-parallel
Strand 3	B	52	56	anti-parallel
Strand 4	B	5	13	parallel
Strand 5	B	61	68	anti-parallel
Strand 6	B	114	120	parallel
Strand 7	B	101	108	anti-parallel
Strand 8	B	89	90	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	141	142	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	169	176	parallel
Strand 3	B	179	185	anti-parallel
Strand 4	B	193	196	anti-parallel
Strand 5	B	147	151	parallel
Strand 6	B	207	213	anti-parallel
Strand 7	B	258	263	parallel
Strand 8	B	247	252	anti-parallel
Strand 9	B	236	241	anti-parallel
Strand 10	B	283	286	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	41	44	anti-parallel
Strand 3	C	52	56	anti-parallel
Strand 4	C	5	13	parallel
Strand 5	C	61	68	anti-parallel
Strand 6	C	114	120	parallel
Strand 7	C	101	108	anti-parallel
Strand 8	C	89	90	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	141	142	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	279	first strand
Strand 2	C	169	176	parallel
Strand 3	C	179	185	anti-parallel
Strand 4	C	193	196	anti-parallel
Strand 5	C	146	151	parallel
Strand 6	C	207	213	anti-parallel
Strand 7	C	258	263	parallel
Strand 8	C	247	252	anti-parallel
Strand 9	C	234	241	anti-parallel
Strand 10	C	283	286	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	41	44	anti-parallel
Strand 3	D	52	56	anti-parallel
Strand 4	D	5	13	parallel
Strand 5	D	61	68	anti-parallel
Strand 6	D	114	120	parallel
Strand 7	D	101	108	anti-parallel
Strand 8	D	89	90	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	141	142	anti-parallel

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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	169	176	parallel
Strand 3	D	179	185	anti-parallel
Strand 4	D	193	196	anti-parallel
Strand 5	D	146	151	parallel
Strand 6	D	207	213	anti-parallel
Strand 7	D	258	263	parallel
Strand 8	D	247	252	anti-parallel
Strand 9	D	236	241	anti-parallel
Strand 10	D	283	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VB0