Analysis of interatomic Contacts of Structural Units in PDB entry:
3VB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VB9 entry

There are 4 chains in PDB entry 3VB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 23	VAL 482
B	GLN 22	LYS 483
C	GLU 23	VAL 482
D	GLU 23	VAL 482

There are 58 helices in PDB entry 3VB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	41	64	Right-handed alpha
Helix 2	2	A	64	80	Right-handed alpha
Helix 3	3	A	93	98	Right-handed alpha
Helix 4	4	A	116	120	Right-handed alpha
Helix 5	5	A	165	169	Right-handed 310
Helix 6	6	A	196	205	Right-handed alpha
Helix 7	7	A	238	253	Right-handed alpha
Helix 8	8	A	256	258	Right-handed 310
Helix 9	9	A	259	267	Right-handed alpha
Helix 10	10	A	268	270	Right-handed 310
Helix 11	11	A	280	305	Right-handed alpha
Helix 12	12	A	334	345	Right-handed alpha
Helix 13	13	A	349	353	Right-handed 310
Helix 14	14	A	443	445	Right-handed 310
Helix 15	15	A	466	471	Right-handed alpha
Helix 16	16	B	41	64	Right-handed alpha
Helix 17	17	B	64	80	Right-handed alpha
Helix 18	18	B	93	98	Right-handed alpha
Helix 19	19	B	116	120	Right-handed alpha
Helix 20	20	B	165	171	Right-handed 310
Helix 21	21	B	196	205	Right-handed alpha
Helix 22	22	B	238	253	Right-handed alpha
Helix 23	23	B	256	258	Right-handed 310
Helix 24	24	B	259	267	Right-handed alpha
Helix 25	25	B	268	270	Right-handed 310
Helix 26	26	B	280	305	Right-handed alpha
Helix 27	27	B	334	345	Right-handed alpha
Helix 28	28	B	350	354	Right-handed 310
Helix 29	29	B	465	470	Right-handed alpha
Helix 30	30	C	41	64	Right-handed alpha
Helix 31	31	C	64	80	Right-handed alpha
Helix 32	32	C	93	98	Right-handed alpha
Helix 33	33	C	116	120	Right-handed alpha
Helix 34	34	C	165	169	Right-handed 310
Helix 35	35	C	196	205	Right-handed alpha
Helix 36	36	C	238	253	Right-handed alpha
Helix 37	37	C	256	258	Right-handed 310
Helix 38	38	C	259	267	Right-handed alpha
Helix 39	39	C	268	270	Right-handed 310
Helix 40	40	C	280	305	Right-handed alpha
Helix 41	41	C	334	345	Right-handed alpha
Helix 42	42	C	350	354	Right-handed 310
Helix 43	43	C	443	445	Right-handed 310
Helix 44	44	C	466	471	Right-handed alpha
Helix 45	45	D	41	64	Right-handed alpha
Helix 46	46	D	64	80	Right-handed alpha
Helix 47	47	D	93	98	Right-handed alpha
Helix 48	48	D	116	120	Right-handed alpha
Helix 49	49	D	165	169	Right-handed 310
Helix 50	50	D	196	205	Right-handed alpha
Helix 51	51	D	240	253	Right-handed alpha
Helix 52	52	D	256	258	Right-handed 310
Helix 53	53	D	259	267	Right-handed alpha
Helix 54	54	D	268	270	Right-handed 310
Helix 55	55	D	280	305	Right-handed alpha
Helix 56	56	D	334	345	Right-handed alpha
Helix 57	57	D	350	354	Right-handed 310
Helix 58	58	D	466	471	Right-handed alpha

There are 24 sheets in PDB entry 3VB9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	33	36	anti-parallel
Strand 3	A	39	40	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	185	192	anti-parallel
Strand 4	A	109	115	anti-parallel
Strand 5	A	89	91	anti-parallel
Strand 6	A	225	226	parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	157	161	parallel
Strand 3	A	122	126	anti-parallel
Strand 4	A	209	214	anti-parallel
Strand 5	A	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	179	first strand
Strand 2	A	157	161	parallel
Strand 3	A	122	126	anti-parallel
Strand 4	A	209	214	anti-parallel
Strand 5	A	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	456	465	anti-parallel
Strand 4	A	391	401	anti-parallel
Strand 5	A	416	418	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	431	436	parallel
Strand 3	A	381	385	anti-parallel
Strand 4	A	480	481	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	33	36	anti-parallel
Strand 3	B	39	40	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	147	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	185	192	anti-parallel
Strand 4	B	109	115	anti-parallel
Strand 5	B	89	91	anti-parallel
Strand 6	B	225	226	parallel

Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	157	161	parallel
Strand 3	B	122	126	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	157	161	parallel
Strand 3	B	122	126	anti-parallel
Strand 4	B	209	214	anti-parallel
Strand 5	B	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	455	462	anti-parallel
Strand 4	B	394	401	anti-parallel
Strand 5	B	416	418	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	448	first strand
Strand 2	B	430	435	parallel
Strand 3	B	380	385	anti-parallel
Strand 4	B	479	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	26	first strand
Strand 2	C	33	36	anti-parallel
Strand 3	C	39	40	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	147	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	185	192	anti-parallel
Strand 4	C	109	115	anti-parallel
Strand 5	C	88	91	anti-parallel
Strand 6	C	225	226	parallel

Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	157	161	parallel
Strand 3	C	122	126	anti-parallel
Strand 4	C	209	214	anti-parallel
Strand 5	C	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	179	first strand
Strand 2	C	157	161	parallel
Strand 3	C	122	126	anti-parallel
Strand 4	C	209	214	anti-parallel
Strand 5	C	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	361	366	anti-parallel
Strand 3	C	456	465	anti-parallel
Strand 4	C	391	401	anti-parallel
Strand 5	C	416	418	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	449	first strand
Strand 2	C	431	436	parallel
Strand 3	C	381	385	anti-parallel
Strand 4	C	480	481	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	33	36	anti-parallel
Strand 3	D	39	40	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	147	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	185	192	anti-parallel
Strand 4	D	109	115	anti-parallel
Strand 5	D	89	91	anti-parallel
Strand 6	D	225	226	parallel

Back to list of sheets
Back to top of page

There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	157	161	parallel
Strand 3	D	122	126	anti-parallel
Strand 4	D	209	214	anti-parallel
Strand 5	D	217	218	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	157	161	parallel
Strand 3	D	122	126	anti-parallel
Strand 4	D	209	214	anti-parallel
Strand 5	D	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	361	366	anti-parallel
Strand 3	D	456	465	anti-parallel
Strand 4	D	391	401	anti-parallel
Strand 5	D	416	418	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	449	first strand
Strand 2	D	431	436	parallel
Strand 3	D	380	385	anti-parallel
Strand 4	D	480	482	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VB9