Analysis of interatomic Contacts of Structural Units in PDB entry:
3VBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VBA entry

There are 6 chains in PDB entry 3VBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 169
B
 MET 1LEU 169
C
 MET 1GLU 166
D
 MET 1LYS 163
E
 MET 1ALA 165
F
 MET 1ALA 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3VBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 22Right-handed alpha
Helix 2
2
A
23 27Right-handed 310
Helix 3
3
A
31 36Right-handed alpha
Helix 4
4
A
37 39Right-handed 310
Helix 5
5
A
46 51Right-handed alpha
Helix 6
6
A
70 79Right-handed alpha
Helix 7
7
A
90 100Right-handed alpha
Helix 8
8
A
109 114Right-handed alpha
Helix 9
9
A
144 154Right-handed alpha
Helix 10
10
A
155 166Right-handed alpha
Helix 11
11
B
17 22Right-handed alpha
Helix 12
12
B
23 27Right-handed 310
Helix 13
13
B
31 36Right-handed alpha
Helix 14
14
B
37 39Right-handed 310
Helix 15
15
B
46 51Right-handed alpha
Helix 16
16
B
70 79Right-handed alpha
Helix 17
17
B
90 100Right-handed alpha
Helix 18
18
B
109 114Right-handed alpha
Helix 19
19
B
144 154Right-handed alpha
Helix 20
20
B
155 166Right-handed alpha
Helix 21
21
C
17 22Right-handed alpha
Helix 22
22
C
23 27Right-handed 310
Helix 23
23
C
31 36Right-handed alpha
Helix 24
24
C
37 39Right-handed 310
Helix 25
25
C
46 51Right-handed alpha
Helix 26
26
C
70 79Right-handed alpha
Helix 27
27
C
90 101Right-handed alpha
Helix 28
28
C
109 114Right-handed alpha
Helix 29
29
C
144 153Right-handed alpha
Helix 30
30
C
155 164Right-handed alpha
Helix 31
31
D
17 22Right-handed alpha
Helix 32
32
D
23 29Right-handed 310
Helix 33
33
D
31 36Right-handed alpha
Helix 34
34
D
37 39Right-handed 310
Helix 35
35
D
46 51Right-handed alpha
Helix 36
36
D
70 79Right-handed alpha
Helix 37
37
D
90 101Right-handed alpha
Helix 38
38
D
109 114Right-handed alpha
Helix 39
39
D
144 153Right-handed alpha
Helix 40
40
D
155 163Right-handed alpha
Helix 41
41
E
17 22Right-handed alpha
Helix 42
42
E
23 27Right-handed 310
Helix 43
43
E
31 36Right-handed alpha
Helix 44
44
E
37 39Right-handed 310
Helix 45
45
E
46 51Right-handed alpha
Helix 46
46
E
70 79Right-handed alpha
Helix 47
47
E
90 101Right-handed alpha
Helix 48
48
E
109 114Right-handed alpha
Helix 49
49
E
144 153Right-handed alpha
Helix 50
50
E
155 164Right-handed alpha
Helix 51
51
F
17 22Right-handed alpha
Helix 52
52
F
23 27Right-handed 310
Helix 53
53
F
31 36Right-handed alpha
Helix 54
54
F
37 39Right-handed 310
Helix 55
55
F
46 50Right-handed 310
Helix 56
56
F
70 79Right-handed alpha
Helix 57
57
F
90 101Right-handed alpha
Helix 58
58
F
109 114Right-handed 310
Helix 59
59
F
144 153Right-handed alpha
Helix 60
60
F
155 165Right-handed alpha
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There are 6 sheets in PDB entry 3VBA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
83 86parallel
Strand 3
A
56 59parallel
Strand 4
A
4 11parallel
Strand 5
A
119 123anti-parallel
Strand 6
A
128 131anti-parallel
Strand 7
A
137 139anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
83 86parallel
Strand 3
B
56 59parallel
Strand 4
B
4 11parallel
Strand 5
B
119 123anti-parallel
Strand 6
B
128 131anti-parallel
Strand 7
B
137 139anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 106first strand
Strand 2
C
83 86parallel
Strand 3
C
56 59parallel
Strand 4
C
4 11parallel
Strand 5
C
119 123anti-parallel
Strand 6
C
128 131anti-parallel
Strand 7
C
137 139anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 106first strand
Strand 2
D
83 86parallel
Strand 3
D
56 59parallel
Strand 4
D
4 11parallel
Strand 5
D
119 123anti-parallel
Strand 6
D
128 131anti-parallel
Strand 7
D
137 139anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
104 106first strand
Strand 2
E
83 86parallel
Strand 3
E
56 59parallel
Strand 4
E
4 11parallel
Strand 5
E
119 123anti-parallel
Strand 6
E
128 131anti-parallel
Strand 7
E
137 139anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
104 106first strand
Strand 2
F
83 86parallel
Strand 3
F
56 59parallel
Strand 4
F
4 11parallel
Strand 5
F
119 123anti-parallel
Strand 6
F
128 131anti-parallel
Strand 7
F
137 139anti-parallel
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