Analysis of interatomic Contacts of Structural Units in PDB entry:
3VBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VBE entry

There are 4 chains in PDB entry 3VBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 51	MET 367
B	THR 52	VAL 372
C	LEU 44	VAL 372
D	SER 51	MET 367

There are 66 helices in PDB entry 3VBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	57	62	Right-handed 310
Helix 2	2	A	95	109	Right-handed alpha
Helix 3	3	A	127	139	Right-handed alpha
Helix 4	4	A	151	161	Right-handed alpha
Helix 5	5	A	169	171	Right-handed 310
Helix 6	6	A	172	188	Right-handed alpha
Helix 7	7	A	200	209	Right-handed alpha
Helix 8	8	A	209	218	Right-handed alpha
Helix 9	9	A	232	246	Right-handed alpha
Helix 10	10	A	258	264	Right-handed 310
Helix 11	11	A	285	289	Right-handed 310
Helix 12	12	A	296	312	Right-handed alpha
Helix 13	13	A	316	330	Right-handed alpha
Helix 14	14	A	332	336	Right-handed 310
Helix 15	15	A	347	352	Right-handed 310
Helix 16	16	A	354	356	Right-handed 310
Helix 17	17	A	357	367	Right-handed alpha
Helix 18	18	B	57	62	Right-handed 310
Helix 19	19	B	95	109	Right-handed alpha
Helix 20	20	B	125	139	Right-handed alpha
Helix 21	21	B	151	161	Right-handed alpha
Helix 22	22	B	172	187	Right-handed alpha
Helix 23	23	B	199	209	Right-handed alpha
Helix 24	24	B	209	218	Right-handed alpha
Helix 25	25	B	232	246	Right-handed alpha
Helix 26	26	B	258	260	Right-handed 310
Helix 27	27	B	285	289	Right-handed 310
Helix 28	28	B	296	312	Right-handed alpha
Helix 29	29	B	316	331	Right-handed alpha
Helix 30	30	B	332	336	Right-handed 310
Helix 31	31	B	347	352	Right-handed 310
Helix 32	32	B	354	356	Right-handed 310
Helix 33	33	B	357	366	Right-handed alpha
Helix 34	34	C	57	62	Right-handed 310
Helix 35	35	C	87	89	Right-handed 310
Helix 36	36	C	95	109	Right-handed alpha
Helix 37	37	C	125	139	Right-handed alpha
Helix 38	38	C	151	161	Right-handed alpha
Helix 39	39	C	172	188	Right-handed alpha
Helix 40	40	C	199	209	Right-handed alpha
Helix 41	41	C	209	218	Right-handed alpha
Helix 42	42	C	232	246	Right-handed alpha
Helix 43	43	C	260	264	Right-handed 310
Helix 44	44	C	285	289	Right-handed 310
Helix 45	45	C	296	312	Right-handed alpha
Helix 46	46	C	316	332	Right-handed alpha
Helix 47	47	C	333	336	Right-handed 310
Helix 48	48	C	347	352	Right-handed 310
Helix 49	49	C	357	366	Right-handed alpha
Helix 50	50	D	57	62	Right-handed 310
Helix 51	51	D	95	109	Right-handed alpha
Helix 52	52	D	124	139	Right-handed alpha
Helix 53	53	D	151	161	Right-handed alpha
Helix 54	54	D	169	171	Right-handed 310
Helix 55	55	D	172	188	Right-handed alpha
Helix 56	56	D	199	209	Right-handed alpha
Helix 57	57	D	209	218	Right-handed alpha
Helix 58	58	D	232	244	Right-handed alpha
Helix 59	59	D	258	264	Right-handed 310
Helix 60	60	D	285	289	Right-handed 310
Helix 61	61	D	296	312	Right-handed alpha
Helix 62	62	D	316	330	Right-handed alpha
Helix 63	63	D	331	336	Right-handed 310
Helix 64	64	D	347	352	Right-handed 310
Helix 65	65	D	354	356	Right-handed 310
Helix 66	66	D	357	367	Right-handed alpha

There are 8 sheets in PDB entry 3VBE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	339	344	parallel
Strand 4	A	224	228	parallel
Strand 5	A	250	256	parallel
Strand 6	A	291	295	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	168	first strand
Strand 2	A	141	147	parallel
Strand 3	A	118	122	parallel
Strand 4	A	191	193	parallel

Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	339	344	parallel
Strand 4	B	224	228	parallel
Strand 5	B	250	256	parallel
Strand 6	B	291	295	parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	168	first strand
Strand 2	B	141	147	parallel
Strand 3	B	118	122	parallel
Strand 4	B	191	193	parallel

Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	295	first strand
Strand 2	C	250	256	parallel
Strand 3	C	224	228	parallel
Strand 4	C	339	344	parallel
Strand 5	C	80	85	parallel
Strand 6	C	67	69	anti-parallel
Strand 7	D	54	55	parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	141	147	parallel
Strand 3	C	118	121	parallel
Strand 4	C	191	193	parallel

Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	339	344	parallel
Strand 4	D	224	228	parallel
Strand 5	D	250	256	parallel
Strand 6	D	291	295	parallel

Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	168	first strand
Strand 2	D	141	147	parallel
Strand 3	D	118	122	parallel
Strand 4	D	191	193	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VBE