Analysis of interatomic Contacts of Structural Units in PDB entry:
3VBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3VBO entry

There are 3 chains in PDB entry 3VBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 73LEU 297
B
 VAL 82ARG 318
C
 GLY 1GLY 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3VBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 78Right-handed 310
Helix 2
2
A
79 85Right-handed alpha
Helix 3
3
A
112 117Right-handed 310
Helix 4
4
A
118 124Right-handed alpha
Helix 5
5
A
168 173Right-handed 310
Helix 6
6
B
104 106Right-handed 310
Helix 7
7
B
152 156Right-handed 310
Helix 8
8
B
158 167Right-handed alpha
Helix 9
9
B
216 221Right-handed alpha
Helix 10
10
B
222 226Right-handed 310
Helix 11
11
B
231 235Right-handed 310
Helix 12
12
B
240 247Right-handed 310
Helix 13
13
C
43 48Right-handed alpha
Helix 14
14
C
61 70Right-handed 310
Helix 15
15
C
94 98Right-handed 310
Helix 16
16
C
99 106Right-handed alpha
Helix 17
17
C
145 152Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3VBO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 95first strand
Strand 2
A
247 263anti-parallel
Strand 3
A
126 140anti-parallel
Strand 4
A
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
126 140anti-parallel
Strand 3
A
247 263anti-parallel
Strand 4
C
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
90 94anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
259 264parallel
Strand 3
B
168 181anti-parallel
Strand 4
B
301 317anti-parallel
Strand 5
B
133 134anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
259 264parallel
Strand 3
B
168 181anti-parallel
Strand 4
B
301 317anti-parallel
Strand 5
B
138 140anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
281 292anti-parallel
Strand 4
B
188 197anti-parallel
Strand 5
B
249 253anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
211 220anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
164 174anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 74first strand
Strand 2
C
211 220anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
225 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 87first strand
Strand 2
C
193 198anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
153 158anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il