Analysis of interatomic Contacts of Structural Units in PDB entry:
3VC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VC1 entry

There are 12 chains in PDB entry 3VC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 16	VAL 292
B	PRO 15	VAL 292
C	PRO 15	VAL 292
D	THR 5	VAL 292
E	PRO 15	VAL 292
F	PRO 15	VAL 292
G	PRO 15	VAL 292
H	PRO 15	VAL 292
I	PRO 15	VAL 292
J	PRO 17	VAL 292
K	PRO 15	VAL 292
L	PRO 15	VAL 292

There are144 helices in PDB entry 3VC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	32	Right-handed alpha
Helix 2	2	A	34	42	Right-handed alpha
Helix 3	3	A	57	62	Right-handed alpha
Helix 4	4	A	68	90	Right-handed alpha
Helix 5	5	A	109	120	Right-handed alpha
Helix 6	6	A	129	143	Right-handed alpha
Helix 7	7	A	174	178	Right-handed 310
Helix 8	8	A	179	190	Right-handed alpha
Helix 9	9	A	212	223	Right-handed alpha
Helix 10	10	A	228	238	Right-handed alpha
Helix 11	11	A	249	261	Right-handed alpha
Helix 12	12	A	269	279	Right-handed alpha
Helix 13	13	B	19	32	Right-handed alpha
Helix 14	14	B	34	42	Right-handed alpha
Helix 15	15	B	57	62	Right-handed alpha
Helix 16	16	B	68	90	Right-handed alpha
Helix 17	17	B	109	120	Right-handed alpha
Helix 18	18	B	129	143	Right-handed alpha
Helix 19	19	B	174	178	Right-handed 310
Helix 20	20	B	179	190	Right-handed alpha
Helix 21	21	B	212	223	Right-handed alpha
Helix 22	22	B	228	238	Right-handed alpha
Helix 23	23	B	249	261	Right-handed alpha
Helix 24	24	B	269	279	Right-handed alpha
Helix 25	25	C	19	32	Right-handed alpha
Helix 26	26	C	34	42	Right-handed alpha
Helix 27	27	C	57	62	Right-handed alpha
Helix 28	28	C	68	90	Right-handed alpha
Helix 29	29	C	109	120	Right-handed alpha
Helix 30	30	C	129	143	Right-handed alpha
Helix 31	31	C	174	178	Right-handed 310
Helix 32	32	C	179	190	Right-handed alpha
Helix 33	33	C	212	223	Right-handed alpha
Helix 34	34	C	228	238	Right-handed alpha
Helix 35	35	C	249	263	Right-handed alpha
Helix 36	36	C	269	279	Right-handed alpha
Helix 37	37	D	6	13	Right-handed alpha
Helix 38	38	D	19	32	Right-handed alpha
Helix 39	39	D	34	42	Right-handed alpha
Helix 40	40	D	57	62	Right-handed alpha
Helix 41	41	D	68	90	Right-handed alpha
Helix 42	42	D	109	120	Right-handed alpha
Helix 43	43	D	129	143	Right-handed alpha
Helix 44	44	D	174	178	Right-handed 310
Helix 45	45	D	179	190	Right-handed alpha
Helix 46	46	D	212	223	Right-handed alpha
Helix 47	47	D	228	238	Right-handed alpha
Helix 48	48	D	249	262	Right-handed alpha
Helix 49	49	D	269	279	Right-handed alpha
Helix 50	50	E	19	31	Right-handed alpha
Helix 51	51	E	34	43	Right-handed alpha
Helix 52	52	E	57	62	Right-handed alpha
Helix 53	53	E	68	90	Right-handed alpha
Helix 54	54	E	109	120	Right-handed alpha
Helix 55	55	E	129	143	Right-handed alpha
Helix 56	56	E	174	178	Right-handed 310
Helix 57	57	E	179	190	Right-handed alpha
Helix 58	58	E	212	223	Right-handed alpha
Helix 59	59	E	228	238	Right-handed alpha
Helix 60	60	E	249	261	Right-handed alpha
Helix 61	61	E	269	279	Right-handed alpha
Helix 62	62	F	19	32	Right-handed alpha
Helix 63	63	F	34	43	Right-handed alpha
Helix 64	64	F	57	62	Right-handed alpha
Helix 65	65	F	68	90	Right-handed alpha
Helix 66	66	F	109	120	Right-handed alpha
Helix 67	67	F	129	143	Right-handed alpha
Helix 68	68	F	174	178	Right-handed 310
Helix 69	69	F	179	190	Right-handed alpha
Helix 70	70	F	212	223	Right-handed alpha
Helix 71	71	F	228	238	Right-handed alpha
Helix 72	72	F	249	262	Right-handed alpha
Helix 73	73	F	269	279	Right-handed alpha
Helix 74	74	G	19	32	Right-handed alpha
Helix 75	75	G	34	42	Right-handed alpha
Helix 76	76	G	57	62	Right-handed alpha
Helix 77	77	G	68	91	Right-handed alpha
Helix 78	78	G	109	120	Right-handed alpha
Helix 79	79	G	129	143	Right-handed alpha
Helix 80	80	G	174	178	Right-handed 310
Helix 81	81	G	179	190	Right-handed alpha
Helix 82	82	G	212	223	Right-handed alpha
Helix 83	83	G	228	238	Right-handed alpha
Helix 84	84	G	249	262	Right-handed alpha
Helix 85	85	G	269	279	Right-handed alpha
Helix 86	86	H	19	32	Right-handed alpha
Helix 87	87	H	34	42	Right-handed alpha
Helix 88	88	H	57	62	Right-handed alpha
Helix 89	89	H	68	90	Right-handed alpha
Helix 90	90	H	109	120	Right-handed alpha
Helix 91	91	H	129	143	Right-handed alpha
Helix 92	92	H	174	178	Right-handed 310
Helix 93	93	H	179	190	Right-handed alpha
Helix 94	94	H	212	223	Right-handed alpha
Helix 95	95	H	228	238	Right-handed alpha
Helix 96	96	H	249	261	Right-handed alpha
Helix 97	97	H	269	279	Right-handed alpha
Helix 98	98	I	19	31	Right-handed alpha
Helix 99	99	I	34	43	Right-handed alpha
Helix 100	100	I	57	62	Right-handed alpha
Helix 101	101	I	68	90	Right-handed alpha
Helix 102	102	I	109	120	Right-handed alpha
Helix 103	103	I	129	143	Right-handed alpha
Helix 104	104	I	174	178	Right-handed 310
Helix 105	105	I	179	190	Right-handed alpha
Helix 106	106	I	212	223	Right-handed alpha
Helix 107	107	I	228	238	Right-handed alpha
Helix 108	108	I	249	262	Right-handed alpha
Helix 109	109	I	269	279	Right-handed alpha
Helix 110	110	J	19	31	Right-handed alpha
Helix 111	111	J	34	42	Right-handed alpha
Helix 112	112	J	57	62	Right-handed alpha
Helix 113	113	J	68	90	Right-handed alpha
Helix 114	114	J	109	120	Right-handed alpha
Helix 115	115	J	129	143	Right-handed alpha
Helix 116	116	J	174	178	Right-handed 310
Helix 117	117	J	179	190	Right-handed alpha
Helix 118	118	J	212	223	Right-handed alpha
Helix 119	119	J	228	238	Right-handed alpha
Helix 120	120	J	249	262	Right-handed alpha
Helix 121	121	J	269	279	Right-handed alpha
Helix 122	122	K	19	32	Right-handed alpha
Helix 123	123	K	34	43	Right-handed alpha
Helix 124	124	K	57	62	Right-handed alpha
Helix 125	125	K	68	90	Right-handed alpha
Helix 126	126	K	109	120	Right-handed alpha
Helix 127	127	K	129	143	Right-handed alpha
Helix 128	128	K	174	178	Right-handed 310
Helix 129	129	K	179	190	Right-handed alpha
Helix 130	130	K	212	223	Right-handed alpha
Helix 131	131	K	228	238	Right-handed alpha
Helix 132	132	K	249	261	Right-handed alpha
Helix 133	133	K	269	279	Right-handed alpha
Helix 134	134	L	19	32	Right-handed alpha
Helix 135	135	L	34	42	Right-handed alpha
Helix 136	136	L	68	90	Right-handed alpha
Helix 137	137	L	109	120	Right-handed alpha
Helix 138	138	L	129	143	Right-handed alpha
Helix 139	139	L	174	178	Right-handed 310
Helix 140	140	L	179	190	Right-handed alpha
Helix 141	141	L	212	223	Right-handed alpha
Helix 142	142	L	228	238	Right-handed alpha
Helix 143	143	L	249	261	Right-handed alpha
Helix 144	144	L	269	280	Right-handed alpha

There are 12 sheets in PDB entry 3VC1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	122	127	parallel
Strand 3	A	100	104	parallel
Strand 4	A	166	172	parallel
Strand 5	A	191	204	parallel
Strand 6	A	282	291	anti-parallel
Strand 7	A	241	248	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	122	127	parallel
Strand 3	B	100	104	parallel
Strand 4	B	166	172	parallel
Strand 5	B	191	204	parallel
Strand 6	B	282	291	anti-parallel
Strand 7	B	241	248	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	122	127	parallel
Strand 3	C	100	104	parallel
Strand 4	C	166	172	parallel
Strand 5	C	191	204	parallel
Strand 6	C	282	291	anti-parallel
Strand 7	C	241	248	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	122	127	parallel
Strand 3	D	100	104	parallel
Strand 4	D	166	172	parallel
Strand 5	D	191	204	parallel
Strand 6	D	282	291	anti-parallel
Strand 7	D	241	248	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	153	first strand
Strand 2	E	122	127	parallel
Strand 3	E	100	104	parallel
Strand 4	E	166	172	parallel
Strand 5	E	191	204	parallel
Strand 6	E	282	291	anti-parallel
Strand 7	E	241	248	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	153	first strand
Strand 2	F	122	127	parallel
Strand 3	F	100	104	parallel
Strand 4	F	166	172	parallel
Strand 5	F	191	204	parallel
Strand 6	F	282	291	anti-parallel
Strand 7	F	241	248	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	153	first strand
Strand 2	G	122	127	parallel
Strand 3	G	100	104	parallel
Strand 4	G	166	172	parallel
Strand 5	G	191	204	parallel
Strand 6	G	282	291	anti-parallel
Strand 7	G	241	248	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	153	first strand
Strand 2	H	122	127	parallel
Strand 3	H	100	104	parallel
Strand 4	H	166	172	parallel
Strand 5	H	191	204	parallel
Strand 6	H	282	291	anti-parallel
Strand 7	H	241	248	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	153	first strand
Strand 2	I	122	127	parallel
Strand 3	I	100	104	parallel
Strand 4	I	166	172	parallel
Strand 5	I	191	204	parallel
Strand 6	I	282	291	anti-parallel
Strand 7	I	241	248	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	153	first strand
Strand 2	J	122	127	parallel
Strand 3	J	100	104	parallel
Strand 4	J	166	172	parallel
Strand 5	J	191	204	parallel
Strand 6	J	282	291	anti-parallel
Strand 7	J	241	248	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	149	153	first strand
Strand 2	K	122	127	parallel
Strand 3	K	100	104	parallel
Strand 4	K	166	172	parallel
Strand 5	K	191	204	parallel
Strand 6	K	282	291	anti-parallel
Strand 7	K	241	248	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	153	first strand
Strand 2	L	122	127	parallel
Strand 3	L	100	104	parallel
Strand 4	L	166	172	parallel
Strand 5	L	191	204	parallel
Strand 6	L	282	291	anti-parallel
Strand 7	L	241	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VC1