Analysis of interatomic Contacts of Structural Units in PDB entry:
3VC2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VC2 entry

There are 12 chains in PDB entry 3VC2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 16	VAL 292
B	ALA 16	VAL 292
C	PRO 17	VAL 292
D	THR 5	VAL 292
E	ALA 16	VAL 292
F	PRO 15	VAL 292
G	PRO 15	VAL 292
H	ALA 16	VAL 292
I	PRO 17	VAL 292
J	ALA 18	VAL 292
K	PRO 17	VAL 292
L	PRO 15	VAL 292

There are141 helices in PDB entry 3VC2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	32	Right-handed alpha
Helix 2	2	A	34	42	Right-handed alpha
Helix 3	3	A	57	62	Right-handed alpha
Helix 4	4	A	68	90	Right-handed alpha
Helix 5	5	A	109	120	Right-handed alpha
Helix 6	6	A	129	143	Right-handed alpha
Helix 7	7	A	174	178	Right-handed 310
Helix 8	8	A	179	190	Right-handed alpha
Helix 9	9	A	212	223	Right-handed alpha
Helix 10	10	A	228	238	Right-handed alpha
Helix 11	11	A	249	261	Right-handed alpha
Helix 12	12	A	269	279	Right-handed alpha
Helix 13	13	B	19	32	Right-handed alpha
Helix 14	14	B	57	62	Right-handed alpha
Helix 15	15	B	68	90	Right-handed alpha
Helix 16	16	B	109	120	Right-handed alpha
Helix 17	17	B	129	143	Right-handed alpha
Helix 18	18	B	174	178	Right-handed 310
Helix 19	19	B	179	190	Right-handed alpha
Helix 20	20	B	212	223	Right-handed alpha
Helix 21	21	B	228	238	Right-handed alpha
Helix 22	22	B	249	262	Right-handed alpha
Helix 23	23	B	269	280	Right-handed alpha
Helix 24	24	C	19	32	Right-handed alpha
Helix 25	25	C	57	62	Right-handed alpha
Helix 26	26	C	68	90	Right-handed alpha
Helix 27	27	C	109	120	Right-handed alpha
Helix 28	28	C	129	143	Right-handed alpha
Helix 29	29	C	174	178	Right-handed 310
Helix 30	30	C	179	190	Right-handed alpha
Helix 31	31	C	212	223	Right-handed alpha
Helix 32	32	C	228	238	Right-handed alpha
Helix 33	33	C	249	263	Right-handed alpha
Helix 34	34	C	269	279	Right-handed alpha
Helix 35	35	D	6	14	Right-handed alpha
Helix 36	36	D	19	32	Right-handed alpha
Helix 37	37	D	34	43	Right-handed alpha
Helix 38	38	D	57	62	Right-handed alpha
Helix 39	39	D	68	90	Right-handed alpha
Helix 40	40	D	109	120	Right-handed alpha
Helix 41	41	D	129	143	Right-handed alpha
Helix 42	42	D	174	178	Right-handed 310
Helix 43	43	D	179	190	Right-handed alpha
Helix 44	44	D	212	223	Right-handed alpha
Helix 45	45	D	228	238	Right-handed alpha
Helix 46	46	D	249	261	Right-handed alpha
Helix 47	47	D	269	279	Right-handed alpha
Helix 48	48	E	19	31	Right-handed alpha
Helix 49	49	E	34	43	Right-handed alpha
Helix 50	50	E	57	62	Right-handed alpha
Helix 51	51	E	68	90	Right-handed alpha
Helix 52	52	E	109	120	Right-handed alpha
Helix 53	53	E	129	144	Right-handed alpha
Helix 54	54	E	174	178	Right-handed 310
Helix 55	55	E	179	190	Right-handed alpha
Helix 56	56	E	212	223	Right-handed alpha
Helix 57	57	E	228	238	Right-handed alpha
Helix 58	58	E	249	263	Right-handed alpha
Helix 59	59	E	269	279	Right-handed alpha
Helix 60	60	F	19	32	Right-handed alpha
Helix 61	61	F	39	43	Right-handed 310
Helix 62	62	F	57	62	Right-handed alpha
Helix 63	63	F	68	90	Right-handed alpha
Helix 64	64	F	109	120	Right-handed alpha
Helix 65	65	F	129	143	Right-handed alpha
Helix 66	66	F	174	178	Right-handed 310
Helix 67	67	F	179	190	Right-handed alpha
Helix 68	68	F	212	223	Right-handed alpha
Helix 69	69	F	228	238	Right-handed alpha
Helix 70	70	F	249	262	Right-handed alpha
Helix 71	71	F	269	280	Right-handed alpha
Helix 72	72	G	19	32	Right-handed alpha
Helix 73	73	G	34	43	Right-handed alpha
Helix 74	74	G	57	62	Right-handed alpha
Helix 75	75	G	68	90	Right-handed alpha
Helix 76	76	G	109	120	Right-handed alpha
Helix 77	77	G	129	143	Right-handed alpha
Helix 78	78	G	174	178	Right-handed 310
Helix 79	79	G	179	190	Right-handed alpha
Helix 80	80	G	212	223	Right-handed alpha
Helix 81	81	G	228	238	Right-handed alpha
Helix 82	82	G	249	262	Right-handed alpha
Helix 83	83	G	269	280	Right-handed alpha
Helix 84	84	H	19	32	Right-handed alpha
Helix 85	85	H	34	42	Right-handed alpha
Helix 86	86	H	57	62	Right-handed alpha
Helix 87	87	H	68	90	Right-handed alpha
Helix 88	88	H	109	120	Right-handed alpha
Helix 89	89	H	129	143	Right-handed alpha
Helix 90	90	H	174	178	Right-handed 310
Helix 91	91	H	179	190	Right-handed alpha
Helix 92	92	H	212	223	Right-handed alpha
Helix 93	93	H	228	238	Right-handed alpha
Helix 94	94	H	249	261	Right-handed alpha
Helix 95	95	H	269	280	Right-handed alpha
Helix 96	96	I	19	31	Right-handed alpha
Helix 97	97	I	34	43	Right-handed alpha
Helix 98	98	I	57	62	Right-handed alpha
Helix 99	99	I	68	90	Right-handed alpha
Helix 100	100	I	109	120	Right-handed alpha
Helix 101	101	I	129	143	Right-handed alpha
Helix 102	102	I	174	178	Right-handed 310
Helix 103	103	I	179	190	Right-handed alpha
Helix 104	104	I	212	223	Right-handed alpha
Helix 105	105	I	228	238	Right-handed alpha
Helix 106	106	I	249	263	Right-handed alpha
Helix 107	107	I	269	279	Right-handed alpha
Helix 108	108	J	19	31	Right-handed alpha
Helix 109	109	J	34	43	Right-handed alpha
Helix 110	110	J	57	62	Right-handed alpha
Helix 111	111	J	68	90	Right-handed alpha
Helix 112	112	J	109	120	Right-handed alpha
Helix 113	113	J	129	143	Right-handed alpha
Helix 114	114	J	174	178	Right-handed 310
Helix 115	115	J	179	190	Right-handed alpha
Helix 116	116	J	212	223	Right-handed alpha
Helix 117	117	J	228	238	Right-handed alpha
Helix 118	118	J	249	263	Right-handed alpha
Helix 119	119	J	269	279	Right-handed alpha
Helix 120	120	K	19	31	Right-handed alpha
Helix 121	121	K	57	62	Right-handed alpha
Helix 122	122	K	68	90	Right-handed alpha
Helix 123	123	K	109	120	Right-handed alpha
Helix 124	124	K	129	143	Right-handed alpha
Helix 125	125	K	174	178	Right-handed 310
Helix 126	126	K	179	190	Right-handed alpha
Helix 127	127	K	212	223	Right-handed alpha
Helix 128	128	K	228	238	Right-handed alpha
Helix 129	129	K	249	263	Right-handed alpha
Helix 130	130	K	269	279	Right-handed alpha
Helix 131	131	L	19	32	Right-handed alpha
Helix 132	132	L	57	62	Right-handed alpha
Helix 133	133	L	68	90	Right-handed alpha
Helix 134	134	L	109	120	Right-handed alpha
Helix 135	135	L	129	143	Right-handed alpha
Helix 136	136	L	174	178	Right-handed 310
Helix 137	137	L	179	190	Right-handed alpha
Helix 138	138	L	212	223	Right-handed alpha
Helix 139	139	L	228	238	Right-handed alpha
Helix 140	140	L	249	262	Right-handed alpha
Helix 141	141	L	269	280	Right-handed alpha

There are 12 sheets in PDB entry 3VC2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	122	127	parallel
Strand 3	A	100	104	parallel
Strand 4	A	166	172	parallel
Strand 5	A	191	204	parallel
Strand 6	A	282	291	anti-parallel
Strand 7	A	241	248	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	122	127	parallel
Strand 3	B	100	104	parallel
Strand 4	B	166	172	parallel
Strand 5	B	191	204	parallel
Strand 6	B	282	291	anti-parallel
Strand 7	B	241	248	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	122	127	parallel
Strand 3	C	100	104	parallel
Strand 4	C	166	172	parallel
Strand 5	C	191	204	parallel
Strand 6	C	282	291	anti-parallel
Strand 7	C	241	248	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	122	127	parallel
Strand 3	D	100	104	parallel
Strand 4	D	166	172	parallel
Strand 5	D	191	204	parallel
Strand 6	D	282	291	anti-parallel
Strand 7	D	241	248	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	153	first strand
Strand 2	E	122	127	parallel
Strand 3	E	100	104	parallel
Strand 4	E	166	172	parallel
Strand 5	E	191	204	parallel
Strand 6	E	282	291	anti-parallel
Strand 7	E	241	248	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	153	first strand
Strand 2	F	122	127	parallel
Strand 3	F	100	104	parallel
Strand 4	F	166	172	parallel
Strand 5	F	191	204	parallel
Strand 6	F	282	291	anti-parallel
Strand 7	F	241	248	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	153	first strand
Strand 2	G	122	127	parallel
Strand 3	G	100	104	parallel
Strand 4	G	166	172	parallel
Strand 5	G	191	204	parallel
Strand 6	G	282	291	anti-parallel
Strand 7	G	241	248	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	153	first strand
Strand 2	H	122	127	parallel
Strand 3	H	100	104	parallel
Strand 4	H	166	172	parallel
Strand 5	H	191	204	parallel
Strand 6	H	282	291	anti-parallel
Strand 7	H	241	248	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	153	first strand
Strand 2	I	122	127	parallel
Strand 3	I	100	104	parallel
Strand 4	I	166	172	parallel
Strand 5	I	191	204	parallel
Strand 6	I	282	291	anti-parallel
Strand 7	I	241	248	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	153	first strand
Strand 2	J	122	127	parallel
Strand 3	J	100	104	parallel
Strand 4	J	166	172	parallel
Strand 5	J	191	204	parallel
Strand 6	J	282	291	anti-parallel
Strand 7	J	241	248	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	149	153	first strand
Strand 2	K	122	127	parallel
Strand 3	K	100	104	parallel
Strand 4	K	166	172	parallel
Strand 5	K	191	204	parallel
Strand 6	K	282	291	anti-parallel
Strand 7	K	241	248	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	153	first strand
Strand 2	L	122	127	parallel
Strand 3	L	100	104	parallel
Strand 4	L	166	172	parallel
Strand 5	L	191	204	parallel
Strand 6	L	282	291	anti-parallel
Strand 7	L	241	248	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VC2

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VC2