Analysis of interatomic Contacts of Structural Units in PDB entry:
3VC3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3VC3 entry

There are 5 chains in PDB entry 3VC3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 51	VAL 372
B	SER 51	VAL 372
C	SER 51	VAL 372
D	ALA 50	VAL 372
E	SER 51	ALA 79

There are102 helices in PDB entry 3VC3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	57	62	Right-handed 310
Helix 2	2	A	87	89	Right-handed 310
Helix 3	3	A	95	109	Right-handed alpha
Helix 4	4	A	125	139	Right-handed alpha
Helix 5	5	A	151	161	Right-handed alpha
Helix 6	6	A	169	171	Right-handed 310
Helix 7	7	A	172	188	Right-handed alpha
Helix 8	8	A	199	209	Right-handed alpha
Helix 9	9	A	209	218	Right-handed alpha
Helix 10	10	A	232	246	Right-handed alpha
Helix 11	11	A	258	264	Right-handed 310
Helix 12	12	A	285	289	Right-handed 310
Helix 13	13	A	296	312	Right-handed alpha
Helix 14	14	A	316	331	Right-handed alpha
Helix 15	15	A	332	336	Right-handed 310
Helix 16	16	A	347	352	Right-handed 310
Helix 17	17	A	357	366	Right-handed alpha
Helix 18	18	B	57	62	Right-handed 310
Helix 19	19	B	87	89	Right-handed 310
Helix 20	20	B	95	109	Right-handed alpha
Helix 21	21	B	125	139	Right-handed alpha
Helix 22	22	B	151	161	Right-handed alpha
Helix 23	23	B	169	171	Right-handed 310
Helix 24	24	B	172	188	Right-handed alpha
Helix 25	25	B	199	209	Right-handed alpha
Helix 26	26	B	209	218	Right-handed alpha
Helix 27	27	B	232	246	Right-handed alpha
Helix 28	28	B	258	260	Right-handed 310
Helix 29	29	B	285	289	Right-handed 310
Helix 30	30	B	296	312	Right-handed alpha
Helix 31	31	B	316	331	Right-handed alpha
Helix 32	32	B	332	336	Right-handed 310
Helix 33	33	B	347	352	Right-handed 310
Helix 34	34	B	357	367	Right-handed alpha
Helix 35	35	C	57	62	Right-handed 310
Helix 36	36	C	87	89	Right-handed 310
Helix 37	37	C	95	109	Right-handed alpha
Helix 38	38	C	125	139	Right-handed alpha
Helix 39	39	C	151	161	Right-handed alpha
Helix 40	40	C	169	171	Right-handed 310
Helix 41	41	C	172	188	Right-handed alpha
Helix 42	42	C	199	209	Right-handed alpha
Helix 43	43	C	209	218	Right-handed alpha
Helix 44	44	C	232	246	Right-handed alpha
Helix 45	45	C	258	260	Right-handed 310
Helix 46	46	C	285	289	Right-handed 310
Helix 47	47	C	296	312	Right-handed alpha
Helix 48	48	C	316	332	Right-handed alpha
Helix 49	49	C	333	336	Right-handed 310
Helix 50	50	C	347	352	Right-handed 310
Helix 51	51	C	357	366	Right-handed alpha
Helix 52	52	D	57	62	Right-handed 310
Helix 53	53	D	87	89	Right-handed 310
Helix 54	54	D	95	109	Right-handed alpha
Helix 55	55	D	125	139	Right-handed alpha
Helix 56	56	D	151	161	Right-handed alpha
Helix 57	57	D	169	171	Right-handed 310
Helix 58	58	D	172	188	Right-handed alpha
Helix 59	59	D	199	209	Right-handed alpha
Helix 60	60	D	209	218	Right-handed alpha
Helix 61	61	D	232	246	Right-handed alpha
Helix 62	62	D	258	260	Right-handed 310
Helix 63	63	D	285	289	Right-handed 310
Helix 64	64	D	296	312	Right-handed alpha
Helix 65	65	D	316	331	Right-handed alpha
Helix 66	66	D	332	336	Right-handed 310
Helix 67	67	D	347	352	Right-handed 310
Helix 68	68	D	357	366	Right-handed alpha
Helix 69	69	E	57	62	Right-handed 310
Helix 70	70	E	87	89	Right-handed 310
Helix 71	71	E	95	109	Right-handed alpha
Helix 72	72	E	125	139	Right-handed alpha
Helix 73	73	E	151	161	Right-handed alpha
Helix 74	74	E	169	171	Right-handed 310
Helix 75	75	E	172	188	Right-handed alpha
Helix 76	76	E	199	209	Right-handed alpha
Helix 77	77	E	209	218	Right-handed alpha
Helix 78	78	E	232	246	Right-handed alpha
Helix 79	79	E	258	260	Right-handed 310
Helix 80	80	E	285	289	Right-handed 310
Helix 81	81	E	296	312	Right-handed alpha
Helix 82	82	E	316	332	Right-handed alpha
Helix 83	83	E	333	336	Right-handed 310
Helix 84	84	E	347	352	Right-handed 310
Helix 85	85	E	357	367	Right-handed alpha
Helix 86	86	F	57	62	Right-handed 310
Helix 87	87	F	87	89	Right-handed 310
Helix 88	88	F	95	109	Right-handed alpha
Helix 89	89	F	125	139	Right-handed alpha
Helix 90	90	F	151	161	Right-handed alpha
Helix 91	91	F	169	171	Right-handed 310
Helix 92	92	F	172	188	Right-handed alpha
Helix 93	93	F	199	209	Right-handed alpha
Helix 94	94	F	209	218	Right-handed alpha
Helix 95	95	F	232	246	Right-handed alpha
Helix 96	96	F	258	260	Right-handed 310
Helix 97	97	F	285	289	Right-handed 310
Helix 98	98	F	296	312	Right-handed alpha
Helix 99	99	F	316	332	Right-handed alpha
Helix 100	100	F	333	336	Right-handed 310
Helix 101	101	F	347	352	Right-handed 310
Helix 102	102	F	357	366	Right-handed alpha

There are 12 sheets in PDB entry 3VC3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	339	344	parallel
Strand 4	A	224	228	parallel
Strand 5	A	250	256	parallel
Strand 6	A	291	295	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	168	first strand
Strand 2	A	141	147	parallel
Strand 3	A	118	122	parallel
Strand 4	A	191	192	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	339	344	parallel
Strand 4	B	224	228	parallel
Strand 5	B	250	256	parallel
Strand 6	B	291	295	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	168	first strand
Strand 2	B	141	147	parallel
Strand 3	B	118	122	parallel
Strand 4	B	191	192	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	80	85	anti-parallel
Strand 3	C	339	344	parallel
Strand 4	C	224	228	parallel
Strand 5	C	250	256	parallel
Strand 6	C	291	295	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	141	147	parallel
Strand 3	C	118	122	parallel
Strand 4	C	191	192	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	69	first strand
Strand 2	D	80	85	anti-parallel
Strand 3	D	339	344	parallel
Strand 4	D	224	228	parallel
Strand 5	D	250	256	parallel
Strand 6	D	291	295	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	168	first strand
Strand 2	D	141	147	parallel
Strand 3	D	118	122	parallel
Strand 4	D	191	192	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	69	first strand
Strand 2	E	80	85	anti-parallel
Strand 3	E	339	344	parallel
Strand 4	E	224	228	parallel
Strand 5	E	250	256	parallel
Strand 6	E	291	295	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	168	first strand
Strand 2	E	141	147	parallel
Strand 3	E	118	122	parallel
Strand 4	E	191	193	parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	80	85	anti-parallel
Strand 3	F	339	344	parallel
Strand 4	F	224	228	parallel
Strand 5	F	250	256	parallel
Strand 6	F	291	295	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	168	first strand
Strand 2	F	141	147	parallel
Strand 3	F	118	122	parallel
Strand 4	F	191	192	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3VC3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3VC3